View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_4 (Length: 742)

Name: NF11668_low_4
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_4
NF11668_low_4
[»] chr4 (18 HSPs)
chr4 (442-649)||(27553850-27554057)
chr4 (345-467)||(27554069-27554191)
chr4 (362-630)||(27497660-27497920)
chr4 (493-598)||(27447356-27447461)
chr4 (667-726)||(27553742-27553801)
chr4 (69-274)||(27445117-27445332)
chr4 (74-164)||(27526438-27526530)
chr4 (522-630)||(27489734-27489843)
chr4 (96-164)||(27498133-27498201)
chr4 (365-431)||(27431871-27431937)
chr4 (356-430)||(27556962-27557037)
chr4 (74-141)||(27476432-27476501)
chr4 (74-164)||(27514099-27514191)
chr4 (69-162)||(27516927-27517020)
chr4 (362-428)||(27503432-27503499)
chr4 (362-432)||(27524031-27524102)
chr4 (362-435)||(27514400-27514474)
chr4 (69-110)||(27570383-27570424)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 442 - 649
Target Start/End: Complemental strand, 27554057 - 27553850
Alignment:
Q  442 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554057 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 27553958  T
Q  542 cctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaataaaagataatga 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27553957 cctatgctctctattattttaccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaataaaagataatga 27553858  T
Q  642 atgataaa 649  Q
    ||||||||    
T  27553857 atgataaa 27553850  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 345 - 467
Target Start/End: Complemental strand, 27554191 - 27554069
Alignment:
Q  345 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554191 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 27554092  T
Q  445 aatattaatgcatgaacaaatat 467  Q
    ||||||| |||||||||||||||    
T  27554091 aatattagtgcatgaacaaatat 27554069  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 362 - 630
Target Start/End: Complemental strand, 27497920 - 27497660
Alignment:
Q  362 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtacgtaccaattaatattaatgcatgaa 460  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| ||  | ||||| |||| ||||| ||||  |||||||||||      |||||||    
T  27497920 acttaccagctagacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa-ttatggagtagctaccaattaat------gcatgaa 27497828  T
Q  461 caaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatgctctctattattt 560  Q
     |||||||||||| |  ||||||| || || |||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  27497827 -aaatatgaggttgcatttgtattcgagatagtttgatagggtagggtacaatctaagacaa-caccacattatatctcatcctatgttctctattattt 27497730  T
Q  561 taccgtttcatacaatcatttagcctggaattgggtttctatttcaaaagaacctcattatctataaata 630  Q
    |||| ||||| | ||| |||| || ||||||||||||||  |||||| ||||||||| ||  ||||||||    
T  27497729 taccctttcaaaaaattattttgcttggaattgggtttcagtttcaagagaacctcaataattataaata 27497660  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 493 - 598
Target Start/End: Original strand, 27447356 - 27447461
Alignment:
Q  493 tttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatgctctctattattttaccgtttcatacaatcatttagcctggaatt 592  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||  |||||||| | |||||    
T  27447356 tttgaaagggtggggtacaatctaagacaaacacttcatgatatctcatcctatgctctctattattttaccctttcatacagccatttagctttgaatt 27447455  T
Q  593 gggttt 598  Q
    ||||||    
T  27447456 gggttt 27447461  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 667 - 726
Target Start/End: Complemental strand, 27553801 - 27553742
Alignment:
Q  667 ttattctaataaactacataaaatagataagaaacttgtgtttatgaggtaccttccctt 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27553801 ttattctaataaactacataaaatagataagaaacttgtgtttatgaggtaccttccctt 27553742  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 27445117 - 27445332
Alignment:
Q  69 tttgagttggttctaaatgcttttagtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggctat- 167  Q
    |||||||||||||| |||||||  |||||| ||||||||||||||||| ||||||||  |||||||| |||||  || ||| || ||||||||| | ||     
T  27445117 tttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggaccatg 27445216  T
Q  168 --------------tggcagccatagaacctaagggagacaagagcatataatagatcagtcacatggtattgtcttagatgattttctctcaattttct 253  Q
                  ||| ||||||||||| ||||||||||||   ||||||||||||||    |||||| ||||||||||||||||||||  |||||||     
T  27445217 agattgggagtcaatgggagccatagaacttaagggagacaatgacatataatagatca----catggtgttgtcttagatgattttctc-aaattttca 27445311  T
Q  254 acgtcaaatgtcataataata 274  Q
    || ||||||||||||||||||    
T  27445312 acatcaaatgtcataataata 27445332  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 27526438 - 27526530
Alignment:
Q  74 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 164  Q
    |||||| ||||||||||||  || ||||||||||||||||||||| |||||||| ||||||||||||||| | | ||| ||||||||||||||    
T  27526438 gttggtgctaaatgcttttgcagccatgaatatatatagatgaaaggatatgtaacaaacagtcggcaactatagtgatcagtgaaggagggc 27526530  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 630
Target Start/End: Original strand, 27489734 - 27489843
Alignment:
Q  522 aacaccacatgatatctcatcctatgctctctattattttaccgtttcatacaatca-tttagcctggaattgggtttctatttcaaaagaacctcatta 620  Q
    |||| |||||||||||| |||||||| |||||| ||||||||| ||||| ||||| | ||| || |||||||||||||| ||||||| | || |||| ||    
T  27489734 aacatcacatgatatcttatcctatgttctctaatattttaccctttcaaacaataacttttgcttggaattgggtttcaatttcaagataatctcaata 27489833  T
Q  621 tctataaata 630  Q
     |||||||||    
T  27489834 actataaata 27489843  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 27498201 - 27498133
Alignment:
Q  96 catgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 164  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||| |   ||| ||||||||||||||    
T  27498201 catgaatatatatagatgaaaggatatgtaacaaacagtcggcaactattgtgatcagtgaaggagggc 27498133  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
Q  365 taccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaa 431  Q
    ||||||||||| |||||||||||||| |||||||||||||| | |  ||||||| ||||||||||||    
T  27431871 taccagctggacatcaacattatcaagatgaagaaacatgtataatgcatgtttacaaaattatgaa 27431937  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 27557037 - 27556962
Alignment:
Q  356 ataataacttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatga 430  Q
    ||||| |||||||||||||| ||||||| ||||| ||||||| |||||||||| |  ||||||| |||||||||||    
T  27557037 ataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 27476501 - 27476432
Alignment:
Q  74 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaac 141  Q
    |||||| ||||||||||||  |||||  ||||||||||||||||| ||||| || |||||||||||||||    
T  27476501 gttggtgctaaatgcttttgcagtcaataatatatatagatgaaaggatatttaacaaacagtcggcaac 27476432  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 27514099 - 27514191
Alignment:
Q  74 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 164  Q
    |||||| ||||||||||||  || | | ||||||||||||||||| |||||||| ||||||||||||| | | | ||| || |||||||||||    
T  27514099 gttggtgctaaatgcttttgcagcctttaatatatatagatgaaaggatatgtaacaaacagtcggcagctacaatgatcaatgaaggagggc 27514191  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 27516927 - 27517020
Alignment:
Q  69 tttgagttggttctaaatgcttttagtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagg 162  Q
    |||| |||||| ||||||||||  || ||||||||||||||||||||  ||||  || ||||| ||||||||| | | ||| ||||||||||||    
T  27516927 tttgtgttggtgctaaatgcttgcagccatgaatatatatagatgaacggatacttaacaaaccgtcggcaactataatgatcagtgaaggagg 27517020  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 27503432 - 27503499
Alignment:
Q  362 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattat 428  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||| |  ||||||| |||||||||    
T  27503432 acttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 27524031 - 27524102
Alignment:
Q  362 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag 432  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||||| |  ||||||| | |||||||||||    
T  27524031 acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag 27524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 27514400 - 27514474
Alignment:
Q  362 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtac 435  Q
    |||||| ||||||| |||| |||||||| |||| ||||| ||||||| |  ||||||| ||||||||||||||||    
T  27514400 acttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtac 27514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 27570383 - 27570424
Alignment:
Q  69 tttgagttggttctaaatgcttttagtcatgaatatatatag 110  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  27570383 tttgtgttggttctaaatgcttgcagtcatgaatatatatag 27570424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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