View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_43 (Length: 339)
Name: NF11668_low_43
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 44573715 - 44574036
Alignment:
| Q |
18 |
ggagaattgtcatagtcgtacagtgataagttgaagaaagtaaggctacaaggtttgaggaaacaatatgaattgcttcagatgaaggggtgatttcttt |
117 |
Q |
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| T |
44573715 |
ggagaattgtcatagtcgtacagtgataaggtgaagaaagtaaggctacaaggtttgaggaaataatatgaattgcttcagataaaggggtgatttcttt |
44573814 |
T |
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| Q |
118 |
gtaaaggtgcgaggtaccataaactccatggctcagaatggagagaacctcatagatcagcaagcatgtgaaaaagaaagtgttgctacattcatttagg |
217 |
Q |
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| T |
44573815 |
gtaaagttgcgaggtaccataaactccatggctcataatggagagaacctcatagatcagcaagcatgtgaaaaagaaagtgttgctacattcatttagg |
44573914 |
T |
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| Q |
218 |
ggagaaattgtgtgtgcaccaatgtacattctcaacaaatgttctacacagagattataggagtggttccgaaagagacctgatctgggagaaagctatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44573915 |
ggagaaattgtgtgtgcaccaatgtacattctcaacaaatgttctacacagagattataggagtggttccgaaagagacatgatctgggagaaagctatc |
44574014 |
T |
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| Q |
318 |
aatgaatcatttgaatactttt |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
44574015 |
aatgaatcatttgaatactttt |
44574036 |
T |
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