View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_44 (Length: 335)

Name: NF11668_low_44
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_44
NF11668_low_44
[»] chr2 (10 HSPs)
chr2 (1-178)||(5476201-5476378)
chr2 (1-171)||(5484144-5484314)
chr2 (1-171)||(5489329-5489499)
chr2 (7-166)||(5495116-5495275)
chr2 (188-317)||(31331325-31331455)
chr2 (188-317)||(31338046-31338176)
chr2 (188-317)||(30269838-30269967)
chr2 (19-178)||(5481288-5481447)
chr2 (29-187)||(5466526-5466684)
chr2 (187-242)||(44924226-44924281)
[»] chr8 (2 HSPs)
chr8 (187-317)||(25641734-25641864)
chr8 (188-289)||(6634420-6634526)
[»] chr7 (3 HSPs)
chr7 (186-317)||(4682323-4682454)
chr7 (223-292)||(26224718-26224787)
chr7 (204-292)||(26205109-26205198)
[»] chr4 (2 HSPs)
chr4 (187-317)||(53303231-53303362)
chr4 (187-317)||(8239001-8239131)
[»] chr3 (1 HSPs)
chr3 (188-261)||(7400890-7400963)
[»] chr5 (4 HSPs)
chr5 (188-289)||(7413836-7413937)
chr5 (188-289)||(5075263-5075364)
chr5 (245-305)||(37191192-37191252)
chr5 (188-233)||(37191392-37191437)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 5476378 - 5476201
Alignment:
Q  1 ctcaaactttagaacatgaccagtttggttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatct 100  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||     
T  5476378 ctcaaactttagaatatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatca 5476279  T
Q  101 ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5476278 ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact 5476201  T

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Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5484314 - 5484144
Alignment:
Q  1 ctcaaactttagaacatgaccagtttggttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatct 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||    
T  5484314 ctcaaactttagaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaagaaaggcaattggatggatct 5484215  T
Q  101 ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct 171  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484214 ttgagatctattttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct 5484144  T

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Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5489499 - 5489329
Alignment:
Q  1 ctcaaactttagaacatgaccagtttggttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatct 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||     
T  5489499 ctcaaacttttgaacatgaccagtttggttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaaggatcc 5489400  T
Q  101 ttgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5489399 ttgagatcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtactaacattaaggct 5489329  T

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Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 5495275 - 5495116
Alignment:
Q  7 ctttagaacatgaccagtttggttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatctttgaga 106  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5495275 ctttaaaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatggatctttgaga 5495176  T
Q  107 tcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacatta 166  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5495175 tcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtgctaacatta 5495116  T

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Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 31331325 - 31331455
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttc-taacattttttagtaagtgttac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31331325 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagtgttac 31331424  T
Q  287 attagtgtcactctttttcggtggtgtttat 317  Q
    |||||||||||||||||||||||||||||||    
T  31331425 attagtgtcactctttttcggtggtgtttat 31331455  T

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Target: chr2; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 31338046 - 31338176
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttc-taacattttttagtaagtgttac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31338046 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagtgttac 31338145  T
Q  287 attagtgtcactctttttcggtggtgtttat 317  Q
    |||||||||||||||||||||||||||||||    
T  31338146 attagtgtcactctttttcggtggtgtttat 31338176  T

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Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 30269967 - 30269838
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttaca 287  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||    
T  30269967 cactactacacatatgtgttttagtaacattcatattgcaacacttgtttaatagttactaatatagagattttactaacattttttaataagtgttgca 30269868  T
Q  288 ttagtgtcactctttttcggtggtgtttat 317  Q
    |||||  |||||||||||||| ||||||||    
T  30269867 ttagtaacactctttttcggtagtgtttat 30269838  T

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Target: chr2; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 5481447 - 5481288
Alignment:
Q  19 accagtttggttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatctttgagatcttttttgatg 118  Q
    ||||||||| | |||||||||||||||  ||||   ||| ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||| |    
T  5481447 accagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggatcattgagatcttttttgacg 5481348  T
Q  119 ttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaact 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  5481347 ttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggcttttaact 5481288  T

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Target: chr2; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 5466684 - 5466526
Alignment:
Q  29 ttgtcacattctatacccttccaatcacagcaatcttccccaacccatgaagaaagacaattggaaggatctttgagatcttttttgatgttaaggagtg 128  Q
    |||||||||| ||||||  |||| ||||||||||| | ||||||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||||    
T  5466684 ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtg 5466585  T
Q  129 ccactctctcttccttaatgcaaagagtgctaacattaaggctcttaactagacactga 187  Q
    |||| |||||||| |||||||||||||||||||||| ||||||| |||||| |||||||    
T  5466584 ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactga 5466526  T

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Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 44924281 - 44924226
Alignment:
Q  187 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924281 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatag 44924226  T

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Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 25641864 - 25641734
Alignment:
Q  187 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25641864 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttac 25641765  T
Q  287 attagtgtcactctttttcggtggtgtttat 317  Q
    |||||||||||||||||||||||||||||||    
T  25641764 attagtgtcactctttttcggtggtgtttat 25641734  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 6634526 - 6634420
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcat----cttgcaacacttgtttaatag-ttactaatatagagatttttctaacattttttagtaagtg 282  Q
    ||||||||||| ||||||||||||||||||||||    ||||||||||||  ||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  6634526 cactactacacttatgtgttttagtaacattcattcaccttgcaacacttacttaatgggttactaatatagagatttttctaacattttttaataagtg 6634427  T
Q  283 ttacatt 289  Q
    |||||||    
T  6634426 ttacatt 6634420  T

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Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 4682323 - 4682454
Alignment:
Q  186 gacactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgtta 285  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4682323 gacactactacacatatgtgttttagtaacatttatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgtta 4682422  T
Q  286 cattagtgtcactctttttcggtggtgtttat 317  Q
    ||||||||||||||||||||  ||||||||||    
T  4682423 cattagtgtcactctttttcaatggtgtttat 4682454  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 26224718 - 26224787
Alignment:
Q  223 ttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattagt 292  Q
    |||||||| || ||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  26224718 ttgcaacatttattttatagttactaatataaagatttctctaacattttttaataagtgttacattagt 26224787  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 26205109 - 26205198
Alignment:
Q  204 tgttttagtaa-cattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattagt 292  Q
    ||||||||||| |||||| ||||||||| ||  || ||||||||||||||  |||||| |||||||||||||| ||||| ||||||||||    
T  26205109 tgttttagtaaacattcaccttgcaacatttagtttatagttactaatatgaagatttctctaacattttttaataagtattacattagt 26205198  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 53303362 - 53303231
Alignment:
Q  187 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaa-tagttactaatatagagatttttctaacattttttagtaagtgtta 285  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||     
T  53303362 acactactacacatatgtgttttagtaacatttatcttgcaacacttgtttaagtagttactaatatagagatttttctaacattttttaataagtgttg 53303263  T
Q  286 cattagtgtcactctttttcggtggtgtttat 317  Q
    |||||||  |||||||||||||| ||||||||    
T  53303262 cattagtaacactctttttcggtagtgtttat 53303231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 8239131 - 8239001
Alignment:
Q  187 acactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttac 286  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  8239131 acactagtacatatatatgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttaataagtgttgc 8239032  T
Q  287 attagtgtcactctttttcggtggtgtttat 317  Q
    ||||||  |||||||||||||| ||||||||    
T  8239031 attagtaacactctttttcggtagtgtttat 8239001  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 7400890 - 7400963
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7400890 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttt 7400963  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 7413937 - 7413836
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttaca 287  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||  ||||| |||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  7413937 cactactacacttatgtgttttagtaacattcaccttacaacacttacttaatggttattaatatagaaatttttctaaccttttttaataagtgttaca 7413838  T
Q  288 tt 289  Q
    ||    
T  7413837 tt 7413836  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 5075263 - 5075364
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttaca 287  Q
    ||||| ||||| ||||||||||| ||||||||| ||||||||||||  ||||| ||||| |||||| |||||||||||||||||||||  ||||||||||    
T  5075263 cactattacacttatgtgttttaataacattcaccttgcaacacttacttaatggttaccaatataaagatttttctaacattttttaagaagtgttaca 5075362  T
Q  288 tt 289  Q
    ||    
T  5075363 tt 5075364  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 37191252 - 37191192
Alignment:
Q  245 actaatatagagatttttctaacattttttagtaagtgttacattagtgtcactctttttc 305  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||  |||||||||||    
T  37191252 actaatatagagatttttttaacattttttaataagtgttacattggtaacactctttttc 37191192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 37191437 - 37191392
Alignment:
Q  188 cactactacacatatgtgttttagtaacattcatcttgcaacactt 233  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||    
T  37191437 cactactacacttatgtgtttttgtaacattcaccttgcaacactt 37191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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