View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_47 (Length: 313)
Name: NF11668_low_47
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 27251101 - 27251218
Alignment:
| Q |
128 |
tgcaggaatcaataaaagcttcattcagtgaatcagatgataaagttagagatgcatattcagattttataacttattccaaggaaactttagattctat |
227 |
Q |
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| T |
27251101 |
tgcaggaatcaataaaagaatcattctgtgaatcagatgagacagttcgaggtgcatatgaagatttgataacttcttccaaggagactttggattctat |
27251200 |
T |
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| Q |
228 |
attggaactacaagaggt |
245 |
Q |
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||||||||| |||||||| |
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| T |
27251201 |
attggaactgcaagaggt |
27251218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 1743043 - 1743167
Alignment:
| Q |
121 |
aattgtctgcaggaatcaataaaagcttcattcagtgaatcagatgataaagttagagatgcatattcagattttataacttattccaaggaaactttag |
220 |
Q |
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|||| |||||||||||||||||||| ||||| |||||||||| || | |||||||| |||||| |||||| ||||||| ||||||||| ||||| | |
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| T |
1743043 |
aattttctgcaggaatcaataaaagaatcattttgtgaatcagacgagacagttagaggcgcatatgaagatttgataacttcttccaaggagactttgg |
1743142 |
T |
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| Q |
221 |
attctatattggaactacaagaggt |
245 |
Q |
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| T |
1743143 |
attctatattggaacttcaagaggt |
1743167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 6517425 - 6517383
Alignment:
| Q |
259 |
tgttgtacattagctgcatttctatcctaaacatgtgtctgtg |
301 |
Q |
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| T |
6517425 |
tgttgtacattagctgcatttctatcctaaacatgtgtttgtg |
6517383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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