View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_48 (Length: 311)
Name: NF11668_low_48
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 45550851 - 45551135
Alignment:
| Q |
19 |
tcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaagactg |
118 |
Q |
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| T |
45550851 |
tcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcggttctacttccttgttcttgagaatcttcctccaagactg |
45550950 |
T |
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| Q |
119 |
ttggcttctccaaattggccttgtattgctctggcttctcttccacagtaaatgttttggcctggtcagtggacatgtttcgatcgatttcggtggttga |
218 |
Q |
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| T |
45550951 |
ttggcgtctccaaattggccttgtattgctctggcttctcttccacagtaaatgttttggcctggtcagtggacatgtttcgatcgatttcggtggttga |
45551050 |
T |
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| Q |
219 |
tgaaacaccttcaacccgtggatcatgagaggattcttctcccgtaccttcaatatcaattcttgaatttcctaaattttcatct |
303 |
Q |
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| T |
45551051 |
tgaaacaccttcaacccgtggatcatgagaggattcttctcccgtaccttcaatatcaattcctgaatttcctaaattttcatct |
45551135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 45545637 - 45545744
Alignment:
| Q |
32 |
ttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaagactgttggcttctccaa |
131 |
Q |
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| T |
45545637 |
ttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagctctacttccttgttcttgagaatcttcctccaagtctatttgcctctccaa |
45545736 |
T |
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| Q |
132 |
attggcct |
139 |
Q |
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| T |
45545737 |
attggcct |
45545744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 45549629 - 45549714
Alignment:
| Q |
28 |
ccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaa |
113 |
Q |
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| T |
45549629 |
ccacttgaatcagcgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaatattcctccaa |
45549714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 45544832 - 45544920
Alignment:
| Q |
25 |
gcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaa |
113 |
Q |
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| T |
45544832 |
gcaccacttggatcagtgtctttggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaa |
45544920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 45550141 - 45550201
Alignment:
| Q |
19 |
tcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcag |
79 |
Q |
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| T |
45550141 |
tcaccttccccacttggatcagtgtctttgatttgataattgggaagagtatatgcctcag |
45550201 |
T |
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