View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_5 (Length: 717)

Name: NF11668_low_5
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_5
NF11668_low_5
[»] chr1 (6 HSPs)
chr1 (1-700)||(36395379-36396080)
chr1 (285-374)||(44719928-44720018)
chr1 (292-365)||(11060191-11060265)
chr1 (38-111)||(36396012-36396086)
chr1 (285-365)||(1408223-1408303)
chr1 (655-700)||(50508787-50508832)
[»] chr5 (2 HSPs)
chr5 (289-374)||(23772958-23773044)
chr5 (285-374)||(28864751-28864841)
[»] chr6 (2 HSPs)
chr6 (285-356)||(33986888-33986959)
chr6 (292-365)||(11074633-11074701)
[»] chr8 (5 HSPs)
chr8 (285-374)||(9625944-9626034)
chr8 (285-374)||(31074571-31074661)
chr8 (287-365)||(28525348-28525427)
chr8 (285-326)||(28005937-28005978)
chr8 (285-326)||(28063240-28063281)
[»] chr4 (2 HSPs)
chr4 (285-353)||(24752997-24753065)
chr4 (285-365)||(24745520-24745600)
[»] chr2 (3 HSPs)
chr2 (285-365)||(18675650-18675730)
chr2 (287-365)||(14886927-14887005)
chr2 (288-365)||(26585789-26585867)
[»] chr7 (1 HSPs)
chr7 (285-374)||(330486-330576)


Alignment Details
Target: chr1 (Bit Score: 630; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 36396080 - 36395379
Alignment:
Q  1 tagtcaaaattctaaacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacattattaatcaaa-ttctt 99  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  36396080 tagtcaaaattctatacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacattattaatcaaaattatt 36395981  T
Q  100 tacgatatacaggccattagattaaggagctagtaggggattttcaagaggaacactttcaaaaagataaagaaattttattggagtacgttgagcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36395980 tacgatatacaggccattagattaaggagctagtaggggattttcaaaaggaacactttcaaaaagataaagaaattttattggagtactttgagcaaat 36395881  T
Q  200 ttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttggagctaataatctttc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36395880 ttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttggagctaataatctttc 36395781  T
Q  300 ttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat-caagatatataactgcacactagatgaaaatgg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |    
T  36395780 ttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaattcaagatatacaactgcacaccagatgaaaatag 36395681  T
Q  399 gctttgccagcagcatgtactatagattctaagtagtaatatgcttttggatacatagcagctcattgttgctcatgacttcaacataaattgaaacaag 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36395680 gctttgccagcagcatgtactatagattctaagtagtaatatgcttttggatacatagcagctcattgttgctcatgacttcaacataaattgaaacaaa 36395581  T
Q  499 tactgaatttggaaaaatgtgatgcataaccagacctaagcctgaaacaatgtaggacattggtactagctcattgcatcccataacataaacaaaatac 598  Q
    || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  36395580 tattgaatttggaaaaatgtgattcatacccagacctaagcctgaaacaatgtaggacattggaactagctcattgcatcccataacaaaaacaaaatac 36395481  T
Q  599 tgattttgtgagagagcatgaatcataacttgaggtgagcaggacataaaactgggagatacaattcaaagtgtaacaacagacaaaagaggattgcaaa 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36395480 tgattttgtgagagagcatgaatcataacttgaggtgagcaggacataaaactgggagatacaattcaaagtgtaacagcagacaaaagaggattgcaaa 36395381  T
Q  699 tt 700  Q
    ||    
T  36395380 tt 36395379  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 44720018 - 44719928
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  44720018 agctaataatctttcttataaaatgaaatagtataatttgaagttaacatcgagattaaaaagaagaaactatgaaggaattcaagatata 44719928  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 11060265 - 11060191
Alignment:
Q  292 aatctttcttaaaaaatg-aatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    |||||||||||||||||  ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11060265 aatctttcttaaaaaatttaaatagtataatttgaagttaaccttgagattaaaaagaagaaaccatgaaggaat 11060191  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 36396086 - 36396012
Alignment:
Q  38 cattattaatcaaaattctatacgatacacagacaaaacaggacattattaatc-aaattctttacgatatacag 111  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  36396086 cattattagtcaaaattctatacgatatacagacagaacaggacattattaatcaaaattctatacgatacacag 36396012  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 1408303 - 1408223
Alignment:
Q  285 agctaataatctttcttaaaaaatgaa-tgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    ||||||||||||||| ||||||||||| |||  ||||||||||||||||||||||| ||||||||| | || ||||||||||    
T  1408303 agctaataatctttcataaaaaatgaaatgac-ataatttgaagttaacattgagaataaaaagaaaagacaatgaaggaat 1408223  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 700
Target Start/End: Complemental strand, 50508832 - 50508787
Alignment:
Q  655 agatacaattcaaagtgtaacaacagacaaaagaggattgcaaatt 700  Q
    |||||||||||||||||| ||| |||||||||||| ||| ||||||    
T  50508832 agatacaattcaaagtgtcacatcagacaaaagagaatttcaaatt 50508787  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 23772958 - 23773044
Alignment:
Q  289 aataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  23772958 aataatctttcttaaaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaaccatgaagaaattcaagatata 23773044  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 28864751 - 28864841
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    |||||||||||| | ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||    
T  28864751 agctaataatctcttttaaaaaatgaaatagtatgatttgaagttaacattgaaattaaaaagaagaaaccaagaacgaattcaagatata 28864841  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 33986888 - 33986959
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaacca 356  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33986888 agctaataatctttcttaaaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaacca 33986959  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 11074633 - 11074701
Alignment:
Q  292 aatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    |||||||||||||||||     |||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  11074633 aatctttcttaaaaaat-----agtataatttaaagttaatattaagattaaaaagaagaaagcatgaaggaat 11074701  T

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Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 9625944 - 9626034
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    |||||||||| ||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  9625944 agctaataatttttcttaaaaaatgaaacaatataatttgaagttaacattaagattaaaaagaagaaaccatggaggaattcaagatata 9626034  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 31074661 - 31074571
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||    
T  31074661 agctaataatctttcttaaaaaacgaaacagtataatttgaagttaacgtcgagattataaagaagaaaccatgaaggaattcaagatata 31074571  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 28525427 - 28525348
Alignment:
Q  287 ctaataatctttcttaaaaaa-tgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  28525427 ctaataatctttcttaaaaaaatgaaatagtataatttgaagttaacattaagattaaaaagaagaaactatgaaggaat 28525348  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 28005978 - 28005937
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaa 326  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  28005978 agctaataatctttcttaaaaaataaaatagtataatttgaa 28005937  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 28063281 - 28063240
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaa 326  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  28063281 agctaataatctttcttaaaaaataaaatagtataatttgaa 28063240  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 24752997 - 24753065
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaa 353  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  24752997 agctaataatctttcttagaaaatgaaatagtataatttgaagttaacattgagattaaaaagaagaaa 24753065  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 24745520 - 24745600
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    |||||||| ||||||||||||||||||  |||| ||||| || |||||||||||||||||||||||||||||| |||||||    
T  24745520 agctaatagtctttcttaaaaaatgaaatagtacaatttaaaattaacattgagattaaaaagaagaaaccataaaggaat 24745600  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 18675730 - 18675650
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    ||||||||||||||||||| |||||||  |||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  18675730 agctaataatctttcttaagaaatgaaatagtataacctgaagttaatattgagattaaaaagaagaaaccatgaaggaat 18675650  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 14887005 - 14886927
Alignment:
Q  287 ctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    |||||||| ||||||||||||| ||  ||| |||||||||||||||||||||||||||||| |||||  ||||||||||    
T  14887005 ctaataatatttcttaaaaaataaaatagtgtaatttgaagttaacattgagattaaaaaggagaaattatgaaggaat 14886927  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 26585789 - 26585867
Alignment:
Q  288 taataatctttcttaaaaaa-tgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaat 365  Q
    |||||||||||||||||||| | ||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  26585789 taataatctttcttaaaaaaataaaatagtataatttaaagttgacattgagattaaaaagaagaaaccatgacggaat 26585867  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 330486 - 330576
Alignment:
Q  285 agctaataatctttcttaaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaaccatgaaggaa-tcaagatata 374  Q
    |||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||    
T  330486 agctaataatattccttaaaaaatgaaatagtataatttgaagttaacattgaaattaaaaagaagaaaccatgtacgaattcaagatata 330576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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