View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_51 (Length: 278)
Name: NF11668_low_51
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 52856462 - 52856729
Alignment:
| Q |
1 |
ttttgatagtcatccaagtgacgagcataaatatcatcatattttaagcttttcacaaacttcattttactcaaggactcggaagcaagatcttttttag |
100 |
Q |
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| T |
52856462 |
ttttgatagtcatccaagtgacgagcataaatatcatcatattttaagcttgtcacaaacttcattttactcaaggactcggaagtaagatctttcttag |
52856561 |
T |
|
| Q |
101 |
agttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttcttatcatccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52856562 |
agttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttcttatcatccaa |
52856661 |
T |
|
| Q |
201 |
aacatgtataactccattttcattactgatctacacatcaagaactgcagaaaactgaattccctttg |
268 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52856662 |
aacatgtataactcctttttcattactgatctgcacatcaagaactgcagaaaactgaattccctttg |
52856729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 48487274 - 48487533
Alignment:
| Q |
4 |
tgatagtcatccaagtgacgagcataaatatcatcatattttaagcttttcacaaacttcattttactcaaggactcggaagcaagatcttttttagagt |
103 |
Q |
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|||||||||||||||||||| || ||||||||||||||| |||||||| || | |||||||||||||||||||| | || | |||| || || |||| |
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| T |
48487274 |
tgatagtcatccaagtgacgtgcgtaaatatcatcatatgaaaagctttttgcagatttcattttactcaaggactcagtagtaggatccttctttgagt |
48487373 |
T |
|
| Q |
104 |
tttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaagcttcttatcatccaaaac |
203 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||| |
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| T |
48487374 |
cttcaggattagtaaatggaccatcaaaggacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaactctaaacttcttgtcgtctaaaac |
48487473 |
T |
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| Q |
204 |
atgtataactccattttcattactgatctacacatcaagaactgcagaaaactgaattcc |
263 |
Q |
| |
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||||||||| || || |||||||| |||| || ||||||||||||| ||||||||||||| |
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| T |
48487474 |
atgtataacacctttgtcattactaatctgcatatcaagaactgcacaaaactgaattcc |
48487533 |
T |
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