View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11668_low_6 (Length: 670)
Name: NF11668_low_6
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 600; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 12 - 655
Target Start/End: Complemental strand, 3527944 - 3527301
Alignment:
| Q |
12 |
atgaactaagaggtccaagtcaaaacataagcagttggcaaaaatacatgagccaaggagcaacaacggttcacaaagaaaatcccaatgttcttgtatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3527944 |
atgaactaagaggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatcccaatgttcttgtatt |
3527845 |
T |
|
| Q |
112 |
tgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattagtgtacgaggtacattcctat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3527844 |
tgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggtacattcctat |
3527745 |
T |
|
| Q |
212 |
gcatggtcaactggggatcgaagtgattgggacaaacaaccattgaacaaaaaatgttctaatgtaatgaataatttgaatgataaggcagggtttctaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527744 |
gcatggtcaactggggatcgaagtgattgggacaaacaaccattgaacaaaaaatgtgctaatgtaatgaataatttgaatgataaggcagggtttctaa |
3527645 |
T |
|
| Q |
312 |
tgagtggttctaaccctaatccattggttatgagtgaatttggtgtagactggactgctattgatgacaagaatcaaacattcaatcaaagattcttgtc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527644 |
tgagtggttctaaccctaatccattggttatgagtgaatttggtgctgacttgactgctattgatgacaagaatcaaacattcaatcaaagattcttgtc |
3527545 |
T |
|
| Q |
412 |
atgtatgttagcttatcttgctagggttgatttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaatgcgagtgag |
511 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527544 |
atgtatgttagcttatcttgctggggttgacttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaatgcgagtgag |
3527445 |
T |
|
| Q |
512 |
ccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggtatgtcatttt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527444 |
ccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggtatgtcatttt |
3527345 |
T |
|
| Q |
612 |
actacttgataaatttagtgtctctaacactttgagatgaaatt |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3527344 |
actacttgataaatttagtgtctctaacactttgagatgaaatt |
3527301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 611
Target Start/End: Complemental strand, 3532376 - 3531784
Alignment:
| Q |
7 |
gagagatgaactaagaggtccaagtcaaaacataagcagttggcaaaaatacatgagccaaggagcaacaacggttcacaaagaaaatcccaatgttctt |
106 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| || |||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
3532376 |
gagaaatgaactaagaggtccaggtcaaaacatagacaattggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttcta |
3532277 |
T |
|
| Q |
107 |
gtatttgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattagtgtacgaggtacatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
3532276 |
gtatttgtttctggctttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggtacatt |
3532177 |
T |
|
| Q |
207 |
cctatgcatggtcaactggggatcgaagtgattgggacaaacaaccattgaacaaaaaatgttctaatgtaatgaataatttgaatgataaggcagggtt |
306 |
Q |
| |
|
|||||||||||||||||||| | || |||||| ||||||||||| |||||||| | |||||||||||| |||||||||| ||| || || |
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|
| T |
3532176 |
cctatgcatggtcaactgggtcaccaaaggattggattgtgaaaccattgaaccaaaaatgtgccaatgtaatgaatggattgaatgatagggctggatt |
3532077 |
T |
|
| Q |
307 |
tctaatgagtggttctaaccctaatccattggttatgagtgaatttggtgtagactggactgctattgatgacaagaatcaaacattcaatcaaagattc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
3532076 |
tctaatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggatgacaagaatcaaa------------gattc |
3531989 |
T |
|
| Q |
407 |
ttgtcatgtatgttagcttatcttgctagggttgatttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaatgcga |
506 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
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|
| T |
3531988 |
ttgtcatgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtga |
3531889 |
T |
|
| Q |
507 |
gtgagccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggtatgtc |
606 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
3531888 |
gtgagcattatggtctatggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtc |
3531789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 3555243 - 3554900
Alignment:
| Q |
12 |
atgaactaagaggtccaagtcaaaacataagcagttggcaaaaatacatgagccaaggagcaacaacggttcacaaagaaaatcccaatgttcttgtatt |
111 |
Q |
| |
|
|||||||||||||||||| |||||| || || |||||| || ||||||||||||||||| ||||| ||||| |||| |||||| ||||||| || || |
|
|
| T |
3555243 |
atgaactaagaggtccaaaacaaaacgaaaacaattggcacaagtacatgagccaaggagctacaactgttcataaagcaaatccagatgttctagtctt |
3555144 |
T |
|
| Q |
112 |
tgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattagtgtacgaggtacattcctat |
211 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||| ||||| |||||||| | | |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
3555143 |
tgtttctggcttaaattatgacactgatttaagcttcttgaagacaaagcctctaaatgttaacatagggaacaaattggtgtacgaggtacattcctat |
3555044 |
T |
|
| Q |
212 |
gcatggtcaactggggatcgaagtgattgggacaaacaaccattgaacaaaaaatgttctaatgtaatgaataatttgaatgataaggcagggtttctaa |
311 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3555043 |
gcatggtcaagtggggaacgaagtgattgggacaagcaaccattgaacaaaaaatgtgctaatgtaatgaataatttgaatgataaggcagggtttctca |
3554944 |
T |
|
| Q |
312 |
tgagtggttctaaccctaatccattggttatgagtgaatttggt |
355 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3554943 |
tgagtggttctaaccctaaaccattggttatgagtgaatttggt |
3554900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 7 - 611
Target Start/End: Complemental strand, 3549661 - 3549065
Alignment:
| Q |
7 |
gagagatgaactaagaggtccaagtcaaaacataagcagttggcaaaaatacatgagccaaggagcaacaacggttcacaaagaaaatcccaatgttctt |
106 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||| || |||| | ||||||||||||||||||| |||||| || ||||||| |||||| |||||||| |
|
|
| T |
3549661 |
gagaaatgaactacgaggtccaggtcaaaacaatgacaattggtacaaatacatgagccaaggagtaacaacagtccacaaagcaaatccaaatgttcta |
3549562 |
T |
|
| Q |
107 |
gtatttgtttctggctttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattagtgtacgaggtacatt |
206 |
Q |
| |
|
|| |||||||||||||| || ||||||| |||||||||||||||||| ||||| |||||||| | | ||||||||||||||| ||||| || ||||||| |
|
|
| T |
3549561 |
gtttttgtttctggcttaaattatgacactgatttaagcttcttgaagacaaagcctctaaatgttaacataggagacaaattggtgtatgaagtacatt |
3549462 |
T |
|
| Q |
207 |
cctatgcatggtcaactggggatcgaagtgattgggacaaacaaccattgaacaaaaaatgttc----taatgtaatgaataatttgaatgataaggcag |
302 |
Q |
| |
|
|||||||||| |||| ||| | || |||||| | |||||| |||| ||||||||| | ||||||||||||| |||||||| ||||||| |
|
|
| T |
3549461 |
cctatgcatgatcaatagggtcaccaaaagattggattgagcaaccagtgaataaaaaatgtgctaattaatgtaatgaatggattgaatgacaaggcag |
3549362 |
T |
|
| Q |
303 |
ggtttctaatgagtggttctaaccctaatccattggttatgagtgaatttggtgtagac-tggactgctattgatgacaagaatcaaacattcaatcaaa |
401 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||| |||| ||| |||||| ||| ||||| | |
|
|
| T |
3549361 |
ggtttctcatgagtggttctaaccctaatccattggttatgactgaatttggtatggacatgga-aaatatagatgac------caa------aatcaga |
3549275 |
T |
|
| Q |
402 |
gattcttgtcatgtatgttagcttatcttgctagggttgatttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaa |
501 |
Q |
| |
|
||| ||||||||||| || |||||||||| | | || ||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
3549274 |
gatatttgtcatgtattttggcttatcttggtggagtggatttagattgggctttgtgggctgcacaaggttcttactatattagagaaaaagaaaatat |
3549175 |
T |
|
| Q |
502 |
tgcgagtgagccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggt |
601 |
Q |
| |
|
|| ||| || | || |||| |||||| ||||||||||| ||||||||||||| ||| || ||||||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
3549174 |
tgtgagggaacattatggtttatggagtattgattttagttcacttcgatatcaagaattccctcaaaggtttcaacttttgcagaagaagcttctaggt |
3549075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 403 - 604
Target Start/End: Complemental strand, 3554864 - 3554663
Alignment:
| Q |
403 |
attcttgtcatgtatgttagcttatcttgctagg-gttgatttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaa |
501 |
Q |
| |
|
||||||||| |||||||| || ||||||| |||| || |||||||||||||| || ||| ||||||||||| |||||||||| ||| | || |||| || |
|
|
| T |
3554864 |
attcttgtcttgtatgttggcatatcttg-taggtgtggatttggattgggcattgtgggctgcacaaggtgcttactatataagaaaaaatgaaattat |
3554766 |
T |
|
| Q |
502 |
tgcgagtgagccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggt |
601 |
Q |
| |
|
|| ||||||| ||||||||||||||| | ||||||| ||||| ||||| || ||| ||||||| ||||||||| |||| ||||||||| ||||| |
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|
| T |
3554765 |
tgtgagtgagacttttggtatatggagttatgattttcgcacacttagatatattgaatttcctcaaaggtttcaacttatgcataagaagcttttaggt |
3554666 |
T |
|
| Q |
602 |
atg |
604 |
Q |
| |
|
||| |
|
|
| T |
3554665 |
atg |
3554663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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