View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_62 (Length: 250)
Name: NF11668_low_62
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 7585386 - 7585279
Alignment:
| Q |
89 |
tgaatattttcatgaataataaactataaattcatgatgaaatcaagaaatctatgttaaagtaataggaattggagatccataccatatcaatttcagc |
188 |
Q |
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| T |
7585386 |
tgaatattttcatgaataataaactataaattcatgatgaaatcaagaaatctatgttaaagtattaggaattggagatccataccatatcaatttcagc |
7585287 |
T |
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| Q |
189 |
atcaatgg |
196 |
Q |
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| T |
7585286 |
atcaatgg |
7585279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7585436 - 7585392
Alignment:
| Q |
1 |
caccaattttggctattgatgtttcccttgattgaacttaaaata |
45 |
Q |
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| T |
7585436 |
caccaattttggctattgatgtttcccttgattgaacttaaaata |
7585392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 7095759 - 7095801
Alignment:
| Q |
154 |
taggaattggagatccataccatatcaatttcagcatcaatgg |
196 |
Q |
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| T |
7095759 |
taggaattggagatctataccatatcaattccagcaccaatgg |
7095801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 7585253 - 7585224
Alignment:
| Q |
210 |
tgactcattgcaaacttgtacatcattcat |
239 |
Q |
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| T |
7585253 |
tgactcattgcaaacttgtacatcattcat |
7585224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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