View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_65 (Length: 244)

Name: NF11668_low_65
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_65
NF11668_low_65
[»] chr6 (17 HSPs)
chr6 (23-244)||(26975602-26975823)
chr6 (23-222)||(27664537-27664736)
chr6 (23-241)||(26849363-26849581)
chr6 (23-244)||(26636297-26636518)
chr6 (23-244)||(26742263-26742484)
chr6 (23-244)||(26950394-26950615)
chr6 (23-244)||(26959777-26959998)
chr6 (23-244)||(25074521-25074739)
chr6 (88-244)||(31288984-31289140)
chr6 (133-240)||(28097757-28097864)
chr6 (132-239)||(28140295-28140402)
chr6 (118-240)||(29843301-29843423)
chr6 (118-222)||(26724314-26724418)
chr6 (121-222)||(28243544-28243645)
chr6 (130-222)||(25511650-25511742)
chr6 (130-222)||(26056680-26056772)
chr6 (130-222)||(26076650-26076742)
[»] chr2 (2 HSPs)
chr2 (28-244)||(17992525-17992741)
chr2 (127-240)||(3280414-3280527)
[»] chr5 (1 HSPs)
chr5 (118-239)||(16691613-16691734)
[»] scaffold0007 (3 HSPs)
scaffold0007 (109-172)||(31697-31760)
scaffold0007 (109-172)||(36446-36509)
scaffold0007 (124-172)||(67059-67107)
[»] scaffold0038 (1 HSPs)
scaffold0038 (121-222)||(43706-43807)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 26975602 - 26975823
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| |||||||||||||||||||||||||||| | ||||||| | ||| ||||||||||| | || ||||||||||| ||||||||||||||| |||||    
T  26975602 ctgattaccttgttggactcaaatctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaac 26975701  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||||||| |||||||||||  |||||||||||||||||    
T  26975702 tgggggaatgggtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattca 26975801  T
Q  223 gataaacaaggcctagagtatc 244  Q
    | |||||| ||| |||||||||    
T  26975802 gttaaacatggcttagagtatc 26975823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 27664736 - 27664537
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||| |||||    
T  27664736 ctgagtaccttgttggactcgaatctcgaatatcagaagtgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaac 27664637  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||| ||  |||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||| |||||||||| | ||||| ||||||||||||    
T  27664636 tggaggtctgggtaagacaacacttgctgaagcagtttataattcaattgttaatcaatttgaatgtaggtgtttcctttacaatgttagagaaaattca 27664537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 26849363 - 26849581
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||| | |||||||||||| |||||    
T  26849363 ctgattaccttgttggacttaaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaac 26849462  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||| |||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||  |||||||||||||||||    
T  26849463 tggaggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattca 26849562  T
Q  223 gataaacaaggcctagagt 241  Q
      |||||| ||| ||||||    
T  26849563 cttaaacatggcttagagt 26849581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 26636297 - 26636518
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||||| |||||    
T  26636297 ctgattaccttgttggactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaac 26636396  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
     |  |||||||| ||||||| ||||||||||||  |||||||||  ||| |||| ||||||||||||  |||||||||||| ||||||||||||||||||    
T  26636397 cgaaggaatgggcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattca 26636496  T
Q  223 gataaacaaggcctagagtatc 244  Q
    | |||||| ||| |||||||||    
T  26636497 gttaaacatggcttagagtatc 26636518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 26742263 - 26742484
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||||| |||||    
T  26742263 ctgattaccttgttggactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaac 26742362  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
     |  |||||||| ||||||| ||||||||||||  |||||||||  ||| |||| ||||||||||||  |||||||||||| ||||||||||||||||||    
T  26742363 cgaaggaatgggcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattca 26742462  T
Q  223 gataaacaaggcctagagtatc 244  Q
    | |||||| ||| |||||||||    
T  26742463 gttaaacatggcttagagtatc 26742484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 26950394 - 26950615
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||  || |||||||||||||| ||||||||||| |||||    
T  26950394 ctgattaccttgttggactcaaatctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaac 26950493  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||| |||||||| |||||||||||||||||||| |||||||| |  |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||    
T  26950494 tgggggaatgggaaagacaacacttgctcaagcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattca 26950593  T
Q  223 gataaacaaggcctagagtatc 244  Q
    |  ||||| ||| |||||||||    
T  26950594 gtaaaacatggcttagagtatc 26950615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 26959777 - 26959998
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||| ||||  ||| |||||||  || |||||||||||||| ||||||||||| |||||    
T  26959777 ctgattaccttgttggtctcaaatctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaac 26959876  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||| |||||||| |||||||||||| ||||||| ||||||||||| |||| | | |||||||||| ||||||||||||||| ||||||||||||||||||    
T  26959877 tggaggaatgggaaagacaacactttctcaagcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaaaattca 26959976  T
Q  223 gataaacaaggcctagagtatc 244  Q
    | |||||| ||| |||||||||    
T  26959977 gttaaacatggcttagagtatc 26959998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 25074521 - 25074739
Alignment:
Q  23 ctgagtaccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaac 122  Q
    |||| ||||||||||| ||   ||||||||| ||||||||||||| ||||||||||||||||| |||||   |||| ||||||||||||||| | |||||    
T  25074521 ctgattaccttgttggtcttcgatctcgaatttcagaagtgaattcacttctagacttgggatataatg---gagtatgcataataggaatcgttggaac 25074617  T
Q  123 tggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    |||||||||||| |||||||| |||||||||||  |||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25074618 tggtggaatgggcaagacaactcttgctcaagcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattca 25074717  T
Q  223 gataaacaaggcctagagtatc 244  Q
    | | |||| ||| |||||||||    
T  25074718 gttcaacatggcttagagtatc 25074739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 31288984 - 31289140
Alignment:
Q  88 aatgatggagtctgcataataggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaat 187  Q
    |||||||||||||||||||||||||| || |||||||| |||| |||||| ||||||||| |||||||  |||||||||| |||  | | ||||||||||    
T  31288984 aatgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacactttctcaagcaatttataattcgattattgatcaatttgaat 31289083  T
Q  188 gtaagtgtttccttcataatgtgagagaaaattcagataaacaaggcctagagtatc 244  Q
    |||||||||||||||| | ||||||||||||| | | |||||| ||| |||||||||    
T  31289084 gtaagtgtttccttcacattgtgagagaaaatgctgttaaacatggcttagagtatc 31289140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 28097864 - 28097757
Alignment:
Q  133 ggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaag 232  Q
    |||||||||||||||||  |||| ||||||||||  ||||||   ||||||||||||   ||||||||||| |||||||||||||||||||  ||||| |    
T  28097864 ggtaagacaacacttgcaaaagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatg 28097765  T
Q  233 gcctagag 240  Q
    || |||||    
T  28097764 gcttagag 28097757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 28140295 - 28140402
Alignment:
Q  132 gggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaa 231  Q
    |||||| ||||||||||| |||||  |||||||||  |||||  | ||||||||||||  |||||| ||||||||||||||||||| ||||| ||||||     
T  28140295 gggtaaaacaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacat 28140394  T
Q  232 ggcctaga 239  Q
    ||| ||||    
T  28140395 ggcttaga 28140402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 29843423 - 29843301
Alignment:
Q  118 ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa 217  Q
    |||| ||||||| ||||||| ||||||||||||| |||  |||||||||  |||||| |  |||||||||||  |||||| |||||  | | ||||||||    
T  29843423 ggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaa 29843324  T
Q  218 attcagataaacaaggcctagag 240  Q
     ||||| |||||| ||| |||||    
T  29843323 gttcagctaaacatggcttagag 29843301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 26724314 - 26724418
Alignment:
Q  118 ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa 217  Q
    |||| ||| ||| ||||||| || |||||| ||| ||| |||||| |||  |||||| | ||||||||| |   |||||||||||| |||||||||||||    
T  26724314 ggaagtggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaa 26724413  T
Q  218 attca 222  Q
    |||||    
T  26724414 attca 26724418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 28243544 - 28243645
Alignment:
Q  121 actggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaatt 220  Q
    |||||||||||||| ||||||||||||||   ||| ||||||||||| || ||| | |||||||| |||   ||||| |||||  |||| || |||||||    
T  28243544 actggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaatt 28243643  T
Q  221 ca 222  Q
    ||    
T  28243644 ca 28243645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 25511650 - 25511742
Alignment:
Q  130 atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||||||||  ||||||||||  |||| |||| |||||| |||||| | ||||||||| ||   ||||| ||||||||||| ||||| ||||||    
T  25511650 atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttcataatgtcagagagaattca 25511742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 26056680 - 26056772
Alignment:
Q  130 atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||||||||  ||||||||||  |||| |||| |||||| |||||| | ||||||||| ||   ||||| ||||||||||| ||||| ||||||    
T  26056680 atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 26076650 - 26076742
Alignment:
Q  130 atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca 222  Q
    ||||||||  ||||||||||  |||| |||| |||||| |||||| | ||||||||| ||   ||||| ||||||||||| ||||| ||||||    
T  26076650 atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26076742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 17992741 - 17992525
Alignment:
Q  28 taccttgttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtg 127  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||| || |||||||    
T  17992741 taccttattggtctcaaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtg 17992642  T
Q  128 gaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataa 227  Q
    ||||||| |||||||| ||||||||||| ||||||||||   ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||  ||    
T  17992641 gaatgggcaagacaactcttgctcaagcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtcaa 17992542  T
Q  228 acaaggcctagagtatc 244  Q
    ||| ||| |||||||||    
T  17992541 acatggcttagagtatc 17992525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 3280414 - 3280527
Alignment:
Q  127 ggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagata 226  Q
    ||||||||||||||||| |||||   ||| ||||||||||  |||||||| ||||||||||||   ||||| ||||| |||||||||||||||||||  |    
T  3280414 ggaatgggtaagacaactcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 3280513  T
Q  227 aacaaggcctagag 240  Q
    |||| || ||||||    
T  3280514 aacatggtctagag 3280527  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 16691613 - 16691734
Alignment:
Q  118 ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa 217  Q
    |||| ||| ||||| ||||| ||||||||||||| |||  |||||||||  |||||| | ||||||||||||  |||||| |||||| | ||||||||||    
T  16691613 ggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaa 16691712  T
Q  218 attcagataaacaaggcctaga 239  Q
    |||||  |||||| ||| ||||    
T  16691713 attcatctaaacatggcttaga 16691734  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 31697 - 31760
Alignment:
Q  109 ggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg 172  Q
    ||||||| |||||| |||||||| || || ||||| ||||||||||| ||||||||||||||||    
T  31697 ggaatccacggaaccggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg 31760  T

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Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 36446 - 36509
Alignment:
Q  109 ggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg 172  Q
    ||||||| |||||| |||||||| || || ||||| ||||||||||| ||||||||||||||||    
T  36446 ggaatccacggaaccggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg 36509  T

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Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 67059 - 67107
Alignment:
Q  124 ggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg 172  Q
    |||||||| || || ||||| ||||||||||| ||||||||||||||||    
T  67059 ggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg 67107  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 43706 - 43807
Alignment:
Q  121 actggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaatt 220  Q
    |||||||||||||| ||||||||||||||   ||| ||||||||||| || ||| | |||||||| |||   ||||| |||||  |||| || |||||||    
T  43706 actggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaatt 43805  T
Q  221 ca 222  Q
    ||    
T  43806 ca 43807  T

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