View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_71 (Length: 238)
Name: NF11668_low_71
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_71 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39454708 - 39454932
Alignment:
| Q |
1 |
cataaactaaatttttatatgcaaatttggcaaatttactccaaagaataagaaactgaagagacattacatgattcttacacatcaagtacttttataa |
100 |
Q |
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| T |
39454708 |
cataaactaaatttttatatgcaaatttcgcaaatttactccaaagaataagaaactgaagagacattacatgattcttacacatcaagtacttttataa |
39454807 |
T |
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| Q |
101 |
cacattcaccggttggtaagatattgcaggcactaaagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtac |
200 |
Q |
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| T |
39454808 |
cacattcaccggttggtaagatattgcaggcactaaagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtac |
39454907 |
T |
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| Q |
201 |
tctgaagtgtttgcagttcattgtg |
225 |
Q |
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| T |
39454908 |
tctgaagtgtttgcagttcattgtg |
39454932 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 47365893 - 47365983
Alignment:
| Q |
136 |
aagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcagttcattgtga |
226 |
Q |
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| T |
47365893 |
aagggaatagtgaagcttcaagctatcattcgtggcagagctgtaagacggcaagctatgagtactcttaagtgtttgcagtccattgtga |
47365983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 15693 - 15774
Alignment:
| Q |
136 |
aagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcagt |
217 |
Q |
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| T |
15693 |
aagggaatagtgaaacttcaagctatcattcgtggaagagcagtgagacgccaagctatgaatacactgaagagcttgcagt |
15774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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