View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_72 (Length: 238)

Name: NF11668_low_72
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_72
NF11668_low_72
[»] chr1 (9 HSPs)
chr1 (1-223)||(48661245-48661467)
chr1 (10-223)||(48666849-48667062)
chr1 (6-104)||(11546938-11547036)
chr1 (26-104)||(48656295-48656373)
chr1 (26-104)||(48618530-48618608)
chr1 (6-104)||(48652827-48652925)
chr1 (8-196)||(48585030-48585215)
chr1 (48-105)||(48628612-48628669)
chr1 (148-223)||(48639740-48639815)
[»] chr3 (1 HSPs)
chr3 (6-104)||(19665886-19665984)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48661245 - 48661467
Alignment:
Q  1 cgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661245 cgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatc 48661344  T
Q  101 atcattactcttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattgannnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        
T  48661345 atcattactcttagtgaaatcaccaagagtattgttgcttgctccatttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattgatttt 48661444  T
Q  201 nnngaaatataatcgatgaaatc 223  Q
       ||||||||||||||||||||    
T  48661445 tttgaaatataatcgatgaaatc 48661467  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 48666849 - 48667062
Alignment:
Q  10 gttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatcattact 109  Q
    ||||||||| | ||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||    
T  48666849 gttcttgaggaagatacacaacagtaccaaaagaaatataaaccacagaaccttttggctttgtgtttagccactctataatattacaatcatcattgct 48666948  T
Q  110 cttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattgannnnnnngaaata 209  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||       ||||||    
T  48666949 cttagtgaaatcaccaagtatattgttgcttgctccgtttgcctttggatttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaata 48667048  T
Q  210 taatcgatgaaatc 223  Q
    ||||||||||||||    
T  48667049 taatcgatgaaatc 48667062  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 11546938 - 11547036
Alignment:
Q  6 acttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 104  Q
    ||||||||||| | | | | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  11546938 acttgttcttgtggaaggtacacaatagtcccaaaagaaatataaaccacagaatcttttggctttgtgtttagccactctataatattacaatcatca 11547036  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 48656295 - 48656373
Alignment:
Q  26 cacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 104  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48656295 cacaatagtcccaaaggaaacataaaccacagaaccttttggctttgagtttagccactctataatagtagaatcatca 48656373  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 48618608 - 48618530
Alignment:
Q  26 cacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 104  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  48618608 cacaatagacccaaaagaaatataaaccacagaaccttttggctttgtgcttagccactctataatattacaatcatca 48618530  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 48652827 - 48652925
Alignment:
Q  6 acttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 104  Q
    ||||||||||||| | | | ||||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| || ||||||||    
T  48652827 acttgttcttgaggaaggtacacaacagtaccaaaagaaatataaaccacagaaccttttgtctttgagtttagccactctataatattacaatcatca 48652925  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 48585030 - 48585215
Alignment:
Q  8 ttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatcatta 107  Q
    ||||||||||| ||  || || | |||||| ||||| |  |||||||| ||| ||||||||||||||| |||||||||||| ||  ||  |||||||||     
T  48585030 ttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacggaatcttttggctttgtgtctagccactctatgattttatcatcatcattg 48585129  T
Q  108 ctcttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattga 196  Q
    ||||| | |||||||||| |   | ||||||||||||| ||||| |||||||| |||||  |||||||||||  |||||||| ||||||    
T  48585130 ctcttggcgaaatcaccatg---aatgttgcttgctccttttgcatttggatttttaaatgaaggaccaacagttcttatggggattga 48585215  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 48628612 - 48628669
Alignment:
Q  48 taaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatcat 105  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||| || |||||||||    
T  48628612 taaacaacagaacctgttggctttgtgtgtagccactctataatactacaatcatcat 48628669  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 48639740 - 48639815
Alignment:
Q  148 ttgcctttggattcttaaacaaaggaccaacatgtcttatggtgattgannnnnnngaaatataatcgatgaaatc 223  Q
    |||| ||||||||||||||| ||||||||| | ||||||||||||||||       ||||||||||| ||||||||    
T  48639740 ttgcatttggattcttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatc 48639815  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 19665984 - 19665886
Alignment:
Q  6 acttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 104  Q
    ||||||||||| | | | | ||||||||| ||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||||| || ||||||||    
T  19665984 acttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatca 19665886  T

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