View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_79 (Length: 210)

Name: NF11668_low_79
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_79
NF11668_low_79
[»] chr7 (10 HSPs)
chr7 (19-200)||(34205838-34206019)
chr7 (19-200)||(4163547-4163728)
chr7 (19-200)||(43109355-43109536)
chr7 (19-126)||(45459014-45459121)
chr7 (19-128)||(39295824-39295933)
chr7 (42-118)||(21431401-21431477)
chr7 (42-125)||(32703038-32703121)
chr7 (42-104)||(5651939-5652001)
chr7 (42-126)||(18014897-18014982)
chr7 (42-119)||(8606909-8606986)
[»] chr2 (16 HSPs)
chr2 (19-200)||(3153689-3153870)
chr2 (19-200)||(10059850-10060031)
chr2 (19-200)||(79290-79464)
chr2 (53-200)||(6432640-6432786)
chr2 (19-200)||(44939745-44939919)
chr2 (40-130)||(1222548-1222638)
chr2 (42-118)||(6469058-6469134)
chr2 (42-122)||(14163979-14164059)
chr2 (42-128)||(34385381-34385467)
chr2 (42-118)||(536308-536384)
chr2 (19-128)||(39768586-39768695)
chr2 (45-120)||(34358801-34358876)
chr2 (42-125)||(23289924-23290007)
chr2 (66-112)||(32598788-32598834)
chr2 (46-91)||(16203029-16203074)
chr2 (41-94)||(17930709-17930762)
[»] chr1 (14 HSPs)
chr1 (19-200)||(10386364-10386545)
chr1 (19-130)||(6333082-6333193)
chr1 (42-125)||(31458838-31458921)
chr1 (42-125)||(35368405-35368488)
chr1 (42-125)||(36193272-36193355)
chr1 (42-118)||(24561548-24561624)
chr1 (42-125)||(32641454-32641537)
chr1 (42-125)||(51128502-51128585)
chr1 (44-120)||(22560261-22560337)
chr1 (46-130)||(51169660-51169743)
chr1 (40-94)||(39415809-39415863)
chr1 (41-121)||(22816541-22816621)
chr1 (41-111)||(39495764-39495834)
chr1 (46-94)||(38029786-38029834)
[»] chr6 (10 HSPs)
chr6 (21-200)||(26710748-26710920)
chr6 (19-200)||(16466934-16467108)
chr6 (19-199)||(33146919-33147092)
chr6 (19-200)||(1309118-1309292)
chr6 (19-130)||(3490291-3490402)
chr6 (19-130)||(31933828-31933939)
chr6 (42-125)||(33754645-33754728)
chr6 (42-125)||(17714069-17714152)
chr6 (42-125)||(24991498-24991580)
chr6 (42-126)||(19617298-19617382)
[»] chr3 (21 HSPs)
chr3 (19-200)||(30937110-30937290)
chr3 (19-200)||(16897026-16897201)
chr3 (19-200)||(31644445-31644619)
chr3 (19-199)||(50543106-50543278)
chr3 (19-126)||(40969796-40969903)
chr3 (19-199)||(11583574-11583751)
chr3 (19-99)||(19232695-19232775)
chr3 (97-200)||(19229803-19229899)
chr3 (21-126)||(53050540-53050645)
chr3 (42-118)||(19653231-19653307)
chr3 (42-124)||(15372355-15372437)
chr3 (42-125)||(25617563-25617646)
chr3 (42-125)||(33980601-33980683)
chr3 (33-126)||(7922376-7922469)
chr3 (42-118)||(50029039-50029115)
chr3 (42-125)||(26376655-26376738)
chr3 (42-125)||(37166291-37166374)
chr3 (42-80)||(27874336-27874374)
chr3 (42-128)||(37835777-37835863)
chr3 (42-125)||(14608898-14608979)
chr3 (46-94)||(30819251-30819299)
[»] chr8 (6 HSPs)
chr8 (19-200)||(43599004-43599178)
chr8 (19-200)||(13403600-13403771)
chr8 (19-130)||(24732718-24732829)
chr8 (19-129)||(41692211-41692321)
chr8 (42-125)||(38891839-38891922)
chr8 (42-94)||(12230360-12230412)
[»] chr4 (19 HSPs)
chr4 (19-200)||(38948328-38948502)
chr4 (19-199)||(53679564-53679737)
chr4 (21-126)||(19836717-19836822)
chr4 (19-130)||(19310038-19310149)
chr4 (21-199)||(43470258-43470429)
chr4 (46-126)||(32045521-32045601)
chr4 (42-125)||(7446343-7446426)
chr4 (42-125)||(10009663-10009746)
chr4 (42-125)||(26017669-26017752)
chr4 (23-128)||(8933185-8933290)
chr4 (41-128)||(14528328-14528415)
chr4 (41-120)||(25459497-25459576)
chr4 (41-91)||(36188698-36188748)
chr4 (42-94)||(21479267-21479319)
chr4 (54-125)||(25241945-25242016)
chr4 (42-125)||(38654697-38654775)
chr4 (20-94)||(5592314-5592388)
chr4 (20-94)||(48125982-48126056)
chr4 (42-94)||(13840822-13840874)
[»] chr5 (12 HSPs)
chr5 (19-200)||(3417482-3417656)
chr5 (82-200)||(41611088-41611206)
chr5 (19-130)||(841560-841673)
chr5 (42-125)||(28639230-28639313)
chr5 (29-130)||(2680716-2680816)
chr5 (42-125)||(10468809-10468892)
chr5 (42-125)||(26501413-26501497)
chr5 (42-96)||(38707183-38707237)
chr5 (19-128)||(42495283-42495389)
chr5 (42-128)||(16422154-16422240)
chr5 (46-96)||(33023571-33023621)
chr5 (42-96)||(40526010-40526065)
[»] scaffold0217 (1 HSPs)
scaffold0217 (19-125)||(8249-8355)
[»] scaffold0394 (1 HSPs)
scaffold0394 (42-128)||(5261-5347)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 34206019 - 34205838
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
34206019 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggtggcagcgtccccttacttgtttagggat 34205920  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
34205919 tggctgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 34205838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4163728 - 4163547
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
4163728 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggat 4163629  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
4163628 tggctgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaactttgttttgtctcctttg 4163547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 43109355 - 43109536
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
43109355 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggat 43109454  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
43109455 tgactgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaactttgttttgtctcctttg 43109536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 45459121 - 45459014
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||| || |||||| |||||||||| |||||    
45459121 aggttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtagtgacaacgtccctttgcttgtttggggat 45459022  T
119 tggctgat 126  Q
    ||||||||    
45459021 tggctgat 45459014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 39295824 - 39295933
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||| | ||||||||| || |||||||||| | |||||||  |||||| |||||    
39295824 aggttaagattatatctctcagatggttgaaaacaaaaaatgtgtgcttttcatttggttattatatgtggtggcagcatccccttatttgtttggggat 39295923  T
119 tggctgatgt 128  Q
    || |||||||    
39295924 tgactgatgt 39295933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 21431401 - 21431477
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||| | |||||||| ||||||||||||    
21431401 tggttgaaagctaaaaatgtgtgcttttcttttggttatcatttatggtggcaacatccccttgtttgtttagggat 21431477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 32703121 - 32703038
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||| ||||||||| ||||||||||| |||| |||||||| | |||||||| |||||||||||| ||||||    
32703121 tggttgaaagctaaaaaagtgtgcttttcttttggttataatttatggtggcagcatccccttgtttgtttagggataggctga 32703038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 5651939 - 5652001
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtcccctt 104  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| | |||||||    
5651939 tggttgaaagctaaaaatgtgtgtttttcttttggttatcatttgtggtggcagcatcccctt 5652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 18014982 - 18014897
Alignment:
42 tggttgaaagcaaaaaa-tgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgat 126  Q
    ||||||||||||||||| |||||| |||   |||| ||||||| |||||||||| |||||| |||||||||| |||||||| ||||    
18014982 tggttgaaagcaaaaaaatgtgtgttttttatttgattatcatatgtggtggcagcgtccctttgcttgtttggggattggttgat 18014897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 8606909 - 8606986
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggatt 119  Q
    ||||||||||| |||||||  ||||||||||||||||| ||| |||||||| | |  ||||||| |||||| ||||||    
8606909 tggttgaaagctaaaaatgcttgctttccttttggttaccatatgtggtgggagcaaccccttgtttgtttggggatt 8606986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 3153689 - 3153870
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||    
3153689 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggtggcagcgtccccttgtttgtttagggat 3153788  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
3153789 tgactgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 3153870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 10060031 - 10059850
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
10060031 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggat 10059932  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
10059931 tggctgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaactttgttttgtctcctttg 10059850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 79464 - 79290
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
79464 aggttaagattacatctctcaaatggttaaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggat 79365  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
79364 tggctgat-------gtattattcgttcatgtcttttgtggtttgattggaactattttgtaacctcgttttgtctcctttg 79290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 6432786 - 6432640
Alignment:
53 aaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgtatgatgtatttttcgttcatgtct 152  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
6432786 aaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattggctgatgtatgatgtatttttcgttcatgtc- 6432688  T
153 tttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
6432687 tttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 6432640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 44939919 - 44939745
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||    
44939919 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcatttgtggtggcagcatccccttgctggtttagggat 44939820  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
44939819 tggctgat-------gtattattcgttcatgtcttttgtggtttgattggaactattttgtaaccttattttgtctcctttg 44939745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 1222638 - 1222548
Alignment:
40 aatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgtat 130  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||| |||||||||| ||||||||| ||||||| |||||||||||||||||    
1222638 aatggttgaaagtaaaaaatgtgtgtttttcttttggttaccatatgtggtggcagcgtccccttacttgtttggggattggctgatgtat 1222548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 6469134 - 6469058
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||| || |||||||||    
6469134 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttgtttatttagggat 6469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 14164059 - 14163979
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggc 122  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||   ||||||||| ||||| |||||||||    
14164059 tggttgaaagcaaaaaatgtgtgctttccctttggttatcatatgtggtggcagaatccccttgcatgtttggggattggc 14163979  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 34385467 - 34385381
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    ||||||||||  ||||||||||| ||||||||||||||  |||| |||||||| | |||||||| |||||||||||||| |||||||    
34385467 tggttgaaagataaaaatgtgtgttttccttttggttactatttatggtggcagcatccccttgtttgtttagggattgactgatgt 34385381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 536308 - 536384
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||| || |||||||| ||||||||||| |||||||| |||||||| | |||||||| ||||||||||||    
536308 tggttgaaagctaataatgtgtgatttccttttggctatcatttatggtggcagcatccccttgtttgtttagggat 536384  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 39768586 - 39768695
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||| |    || |||||||| |||||||| |||||||||||| |||||||| |||||||||| | ||| ||||  ||||| |||||    
39768586 aggttaagattacatcttttcggtgattgaaagctaaaaatgtttgctttccttttagttatcatatgtggtggcagcatcctcttgtctgtttggggat 39768685  T
119 tggctgatgt 128  Q
    || |||||||    
39768686 tgactgatgt 39768695  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 34358876 - 34358801
Alignment:
45 ttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    |||||||| ||||||||  |||||||||||||||||||| ||||||||||||  ||||||  |||||| |||||||    
34358876 ttgaaagctaaaaatgtaagctttccttttggttatcatatgtggtggcatcaaccccttttttgtttggggattg 34358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 23290007 - 23289924
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| || ||||| || |||||||||||||| ||  |||||||||| |  ||||||| |||||| ||||||||||||    
23290007 tggttgaaagctaagaatgtttgatttccttttggttaccacatgtggtggcaacaaccccttgtttgtttggggattggctga 23289924  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 32598834 - 32598788
Alignment:
66 tttccttttggttatcatttgtggtggcatcgtccccttgcttgttt 112  Q
    ||||||||||||||||||||||||||||| |  |||||| |||||||    
32598834 tttccttttggttatcatttgtggtggcagcaaccccttacttgttt 32598788  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 16203029 - 16203074
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtg 91  Q
    ||||||| |||||||| || |||||||||||||||||| |||||||    
16203029 tgaaagctaaaaatgtatgttttccttttggttatcatatgtggtg 16203074  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 17930762 - 17930709
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    |||||||||||| |||||||| |||||||| |||||||| | | ||||||||||    
17930762 atggttgaaagctaaaaatgtttgctttccctttggttaccttatgtggtggca 17930709  T

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Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 10386364 - 10386545
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
10386364 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttatggcggcagcgtccccttgcttgtttagggat 10386463  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
10386464 tggctgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaactttgttttgtctcctttg 10386545  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 6333082 - 6333193
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||||    
6333082 aggttaagattatatctcttaaatggttgaaagaaaaaaatgtgtgctttccttttggttaccatatgtggtggcaacgtccccttacttgtttggggat 6333181  T
119 tggctgatgtat 130  Q
    ||||||||||||    
6333182 tggctgatgtat 6333193  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 31458921 - 31458838
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
31458921 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 31458838  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 35368405 - 35368488
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
35368405 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 35368488  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 36193272 - 36193355
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
36193272 tggttgaaagctaaaaatgtgtgcttttcttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 36193355  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 24561548 - 24561624
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| |   |||||||||||||||||||||    
24561548 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggtaaaatccccttgcttgtttagggat 24561624  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 32641537 - 32641454
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||   ||||||||||| ||||||    
32641537 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttctgtgtttagggataggctga 32641454  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 51128585 - 51128502
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| |||||||| | |||| ||| |||||||||||| ||||||    
51128585 tggttgaaaactaaaaatgtgtgcttttcttttggttatcatttatggtggcagcatccctttgtttgtttagggataggctga 51128502  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 22560261 - 22560337
Alignment:
44 gttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    ||||||||| |||||||| |||||||||||||||||||||||  ||||||| |  |||||||||||||| |||||||    
22560261 gttgaaagctaaaaatgtttgctttccttttggttatcatttacggtggcagcaaccccttgcttgtttggggattg 22560337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 51169743 - 51169660
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgtat 130  Q
    ||||| |||||||||| || || ||||||||||||||| |||||||||| | |||||| | |||||| |||||||||||||||||    
51169743 tgaaaacaaaaaatgtttgtttcccttttggttatcatgtgtggtggcagcatcccctggtttgttt-gggattggctgatgtat 51169660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 39415863 - 39415809
Alignment:
40 aatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||||||||||| |||||||| |||||||| |||||||| ||| ||||||||||    
39415863 aatggttgaaagctaaaaatgtttgctttccctttggttaccatatgtggtggca 39415809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 22816621 - 22816541
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattgg 121  Q
    |||| ||||||| |||||||| |  |||||||||||||||||| ||||||||||||  || ||||  |||||||| |||||    
22816621 atggctgaaagctaaaaatgtatattttccttttggttatcatatgtggtggcatcaacctcttgtctgtttaggcattgg 22816541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 39495834 - 39495764
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtt 111  Q
    |||||||||||| |||||||| | ||||| ||||||||| ||||| |||||||| |  ||||||| |||||    
39495834 atggttgaaagctaaaaatgtattctttcattttggttaccatttatggtggcaacaaccccttgtttgtt 39495764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 38029786 - 38029834
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||||| ||||| || || |||||||||||||| ||||||||||||||    
38029786 tgaaagccaaaaaagtttgttttccttttggttaccatttgtggtggca 38029834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 26710920 - 26710748
Alignment:
21 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
26710920 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagggattg 26710821  T
121 gctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26710820 gctgat-------gtatttatcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 26710748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 16467108 - 16466934
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
16467108 aggttaagattacatctctcaaatggttgaaaacaaaaaatgtgtgctttccttttgattatcatttgtggtggcagcgtccccttgcttgtttagggat 16467009  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
16467008 tggctgat-------gtatttttcgttcatgtcttttgtggtttaattggaactattttgtaaccttgttttgtctcctttg 16466934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 33146919 - 33147092
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
33146919 aggttaagattacatctctcaaatggttgaaatcaaaaaatacgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttagagat 33147018  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctccttt 199  Q
    || |       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
33147019 tgac-------tgatgtatttttcgttcatgtcttttgtggtttgattggaactatcttgtaaccttgttttgtctccttt 33147092  T

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Target: chr6; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 1309118 - 1309292
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||| ||||    
1309118 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttggttatcatttgtggtgacagcgcccccttgcttgtttaaggat 1309217  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||||       ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
1309218 tggc-------tgatgtattattcgtccatatcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 1309292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 3490291 - 3490402
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||||    
3490291 aggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggat 3490390  T
119 tggctgatgtat 130  Q
    || |||||||||    
3490391 tgactgatgtat 3490402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 31933939 - 31933828
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||||    
31933939 aggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttacttgtttggggat 31933840  T
119 tggctgatgtat 130  Q
    || |||||||||    
31933839 tgactgatgtat 31933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 33754645 - 33754728
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||| ||||||    
33754645 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcaaaatccccttgcttgtttagggataggctga 33754728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 17714069 - 17714152
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||| | ||||||| |||| ||||||    
17714069 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatcccctagattgtttaaggataggctga 17714152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 24991498 - 24991580
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||| | ||||| ||||||||| |||||||| | |||||||| |||||||||||| ||||||    
24991498 tggttgaaagctaaaaatgtgtgctt-ctttttgattatcatttatggtggcagcatccccttgtttgtttagggataggctga 24991580  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 19617298 - 19617382
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgat 126  Q
    ||||||||||| || ||||  |||||| |||||||||  ||| |||||||||| |  ||||||| |||||| |||||||||||||    
19617298 tggttgaaagctaagaatgcttgcttttcttttggttcacatatgtggtggcagcaaccccttgtttgtttggggattggctgat 19617382  T

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Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 30937110 - 30937290
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
30937110 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgattttcttttggttatcatttgtggtggcagcgtccccttgcttgtttagggat 30937209  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
30937210 tgagtgatgtatgatgtatttttcgttcatgtcttttatggtttgattggaacta-tttgtaaccttgttttgtctcatttg 30937290  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 16897026 - 16897201
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaa-aatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttaggga 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
16897026 aggttaagattacatctctcaaatggttgaaagcaaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcgtccccttgcttgtttaggga 16897125  T
118 ttggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    ||| |       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16897126 ttgac-------tgatgtattattcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 16897201  T

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Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 31644619 - 31644445
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
31644619 aggttaagattacatctctcaaatggttgaaagtaaaaaatgtgtgttttccttttggttatcatttgtggtggcagcgtccccttgtttgtttagggat 31644520  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    | ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31644519 tagc-------tgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 31644445  T

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Target: chr3; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 50543106 - 50543278
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||| |||| | ||||||||||||||||    
50543106 aggttaagattacatctctcaaatggttgaaagcaaaaaatatgtgcttttctttttattatcatttgtggtggcagcgtctcattgcttgtttagggat 50543205  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctccttt 199  Q
    || ||||||||        |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
50543206 tgactgatgta--------tttttgttgatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctccttt 50543278  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 40969903 - 40969796
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||||||| |||||    
40969903 aggttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggat 40969804  T
119 tggctgat 126  Q
    ||||||||    
40969803 tggctgat 40969796  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 11583751 - 11583574
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| |||||||||| |||| |||||||||||| |||||    
11583751 aggttaagattacatctctcaaattgttgaaagcaaaaaatgtgtgttttccatttggttaccatatgtggtggcagcgtctccttgcttgtttcgggat 11583652  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtgg-tttgattggaactattttgtaaccttgttttgtctccttt 199  Q
    ||| |||| ||| ||   |||||  ||  |||||||||||| ||||||  ||||| ||||||||||||||||||| ||||||    
11583651 tggttgatttat-at---ttttttcttgctgtcttttgtggttttgatcagaactcttttgtaaccttgttttgtttccttt 11583574  T

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Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 19232775 - 19232695
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
19232775 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggatatcatttgtggtggcagcgtc 19232695  T

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Target: chr3; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 19229899 - 19229803
Alignment:
97 gtccccttgcttgtttagggattggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcc 196  Q
    |||||||| |||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
19229899 gtccccttccttgtttagggattggctgatgtat-------ttttcgttcatgtctattgtggtttgattggaactattttgtaaccttgttttgtctcc 19229807  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 53050645 - 53050540
Alignment:
21 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| | |||||||| | |||| |||||||||| |||||||    
53050645 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgtttttcatttggttatcatatatggtggcaacatccctttgcttgtttggggattg 53050546  T
121 gctgat 126  Q
    ||||||    
53050545 gctgat 53050540  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 19653231 - 19653307
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||    
19653231 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcaaaatccccttgcttgtttagggat 19653307  T

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Target: chr3; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 15372355 - 15372437
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctg 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||| ||| |||||||||||| |||||    
15372355 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccctttgtttgtttagggataggctg 15372437  T

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Target: chr3; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 25617563 - 25617646
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||| | |||| ||| |||||||||||| ||||||    
25617563 tggttgaaagctaaaaatgtgtgcttttcttttggttatcatttatggtggcagcatccctttgtttgtttagggataggctga 25617646  T

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Target: chr3; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 33980683 - 33980601
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| |||||||| | |||||||| |||||||||||| ||||||    
33980683 tggttgaaagctaaaaatgtgtgctttccttttg-ttatcatttatggtggcagcatccccttgtttgtttagggataggctga 33980601  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 7922376 - 7922469
Alignment:
33 tctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgat 126  Q
    |||||| | ||||| ||| | |||||||||||||||||||||||||||||||| |||||||| | ||||||||  ||||| |||||||||||||    
7922376 tctctcgactggttaaaaactaaaaatgtgtgctttccttttggttatcatttatggtggcaacatccccttgtctgtttggggattggctgat 7922469  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 50029115 - 50029039
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||||   ||| |||||||||||||||||    
50029115 tggttgaaagttaaaaatgtgtgctttccttttggttatcatttatggtggcaaaatcctcttgcttgtttagggat 50029039  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 26376655 - 26376738
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| || ||||| ||||||||||||||||| ||| |||||||||| |  ||||||| |||||| ||||||||||||    
26376655 tggttgaaagctaagaatgtttgctttccttttggttaccatatgtggtggcaacaaccccttgtttgtttggggattggctga 26376738  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 37166291 - 37166374
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||| | ||||| ||||| |||||||||||||| ||| |||||||||| |  ||||||| |||||| ||||||| ||||    
37166291 tggttgaaaactaaaaacgtgtgttttccttttggttaccatatgtggtggcagcaaccccttgtttgtttggggattgactga 37166374  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 27874374 - 27874336
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttat 80  Q
    ||||||||||| |||||||||||||||||||||||||||    
27874374 tggttgaaagctaaaaatgtgtgctttccttttggttat 27874336  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 37835777 - 37835863
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    ||||||||||| |||||| | || |||| ||||||| ||||| |||||||||| | |||||||| |||||| | ||||| |||||||    
37835777 tggttgaaagctaaaaatatatgttttctttttggtcatcatatgtggtggcaacatccccttgtttgtttggagattgactgatgt 37835863  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 14608898 - 14608979
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||  ||||||| |||||||| ||| |||||||||| |  ||||||| |||||| ||||||||||||    
14608898 tggttgaaagctaaaaatgt-agctttccatttggttaccatatgtggtggcaacaaccccttgtttgttt-gggattggctga 14608979  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 30819299 - 30819251
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||| |||||||||| || |||||||||||||||||| |||| |||||    
30819299 tgaaaacaaaaaatgtttgttttccttttggttatcatatgtgttggca 30819251  T

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Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 43599178 - 43599004
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
43599178 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttagttatcatttgtggtggcagcgtccccttgcttgtttagggat 43599079  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    |||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43599078 tgg-------ttgatgtattattcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 43599004  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 13403771 - 13403600
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||| |||||||||||||||||||||||    
13403771 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcattt---gtggcagcgtccccttgcttgtttagggat 13403675  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    || |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13403674 tgac-------tgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 13403600  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 24732829 - 24732718
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| | |||    
24732829 aggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggcagcgtccccttgcttgtttggagat 24732730  T
119 tggctgatgtat 130  Q
    ||||||||||||    
24732729 tggctgatgtat 24732718  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 41692211 - 41692321
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||  ||||| |||||    
41692211 aggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttatggttatcatatgtggtggcagcgtccccttgactgtttggggat 41692310  T
119 tggctgatgta 129  Q
    |||||||||||    
41692311 tggctgatgta 41692321  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 38891839 - 38891922
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||| ||| | |||||||| |||||||||||| ||||||    
38891839 tggttgaaagctaaaaatgtgtgctttcctcttggttatcatttatggtagcagcatccccttgtttgtttagggataggctga 38891922  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 12230412 - 12230360
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
12230412 tggttgaaagcgaaaaatgtttgctttccttttggttaccatatgtggtggca 12230360  T

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Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 38948328 - 38948502
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||    
38948328 aggttaagattacatctctcaaattgttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcagcatccccttgcttgtttaggaat 38948427  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    || |       ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38948428 tgac-------tgatgtattattcgtttatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 38948502  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 53679564 - 53679737
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||    
53679564 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtatgcttttcttttggatatcatttgtggtggcagcgtccacttgcttgtttagggat 53679663  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctccttt 199  Q
    ||||       |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
53679664 tggc-------tgatgtattttttgttgatgtcttttgtggtttgattggaactattttgtaaccttattttgtctccttt 53679737  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 19836822 - 19836717
Alignment:
21 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||||||| |||||||    
19836822 gttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcatatgtggtggcaacgtccctttgcttgtttggggattg 19836723  T
121 gctgat 126  Q
    ||||||    
19836722 gctgat 19836717  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 19310038 - 19310149
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||||    
19310038 aggttaagatcatatctcttcaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatgtgtggtggcagcgtccccttacttgtttggggat 19310137  T
119 tggctgatgtat 130  Q
    ||||| ||||||    
19310138 tggctaatgtat 19310149  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 43470258 - 43470429
Alignment:
21 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||| |||| ||| ||| |||||||    
43470258 gttatgattacttctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggttaccatatgtggtggtagcgtctccttacttatttggggattg 43470357  T
121 gctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctccttt 199  Q
      |||||||      ||||||| ||  |||||||||||||||||||||||||| |||||||  ||||||||| ||||||    
43470358 attgatgta------atttttctttgttgtcttttgtggtttgattggaacta-tttgtaattttgttttgtttccttt 43470429  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 32045521 - 32045601
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgat 126  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||| | |||||||| ||||||||||||||||||||    
32045521 tgaaagctaaaaatgtgtgctttccttttggttatcattcatggtggcagcatccccttgtttgtttagggattggctgat 32045601  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 7446426 - 7446343
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
7446426 tggttgaaagctaaaaatatgtgctttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 7446343  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 10009663 - 10009746
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
10009663 tggttgaaagctaaaaatgtgtgttttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 10009746  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 26017669 - 26017752
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
26017669 tggttgaaagccaaaaatgtgtgttttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 26017752  T

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Target: chr4; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 8933185 - 8933290
Alignment:
23 taagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggc 122  Q
    |||||||||||| |||  |||| | |||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||||     
8933185 taagattacatccctccgatggctaaaagcaaaaaatatgtgctttccttttggttatcatatgtggtggcagcatccccttatttgtttggggattggt 8933284  T
123 tgatgt 128  Q
    ||||||    
8933285 tgatgt 8933290  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 14528415 - 14528328
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    |||||||||| | |||||||||||||| ||||||||||| ||| ||||| |||| | |||| ||||||||||  ||||||| ||||||    
14528415 atggttgaaatctaaaaatgtgtgcttcccttttggttaccatatgtggcggcagcatccctttgcttgtttgaggattggttgatgt 14528328  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 25459497 - 25459576
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattg 120  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||    |||||||||||||| |||||||    
25459497 atggttgaaagcttaaaatgtatgctttccttttgattatcatatgtggtggcagaacccccttgcttgtttggggattg 25459576  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 36188748 - 36188698
Alignment:
41 atggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtg 91  Q
    |||||||||||| |||||||| || |||||||||||||||||| |||||||    
36188748 atggttgaaagctaaaaatgtttgttttccttttggttatcatatgtggtg 36188698  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 21479319 - 21479267
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||||||| | || ||||| ||||||||||||||||||||| ||||||||||    
21479319 tggttgaaatctaagaatgtttgctttccttttggttatcatatgtggtggca 21479267  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 25242016 - 25241945
Alignment:
54 aaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    |||||||| ||||||||||||||||| ||| || ||||||| |   |||||| |||||| ||||||||||||    
25242016 aaaaatgtatgctttccttttggttaccatatgcggtggcaacaatcccttgtttgtttggggattggctga 25241945  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 38654775 - 38654697
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||| ||||| ||||     ||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
38654775 tggttgaaagctaaaaaagtgtgttttc-----ggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 38654697  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 5592314 - 5592388
Alignment:
20 ggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    |||||| |||||||| ||   |||||||||||| ||||||||||| ||||| ||||  || ||||||||||||||    
5592314 ggttaaaattacatcccttcgatggttgaaagctaaaaatgtgtgatttccctttgactaccatttgtggtggca 5592388  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 48126056 - 48125982
Alignment:
20 ggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    |||||| |||||||| ||   |||||||||||| ||||||||||| ||||| ||||  || ||||||||||||||    
48126056 ggttaaaattacatcccttcgatggttgaaagctaaaaatgtgtgatttccctttgactaccatttgtggtggca 48125982  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 13840874 - 13840822
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggca 94  Q
    ||||||||||| |||||  ||||||||||||||| || |||| ||||||||||    
13840874 tggttgaaagctaaaaacatgtgctttccttttgattctcatatgtggtggca 13840822  T

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Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3417656 - 3417482
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
3417656 aggttaagattacatctctcaaatgattgaaagcacaaaatgtgtgctttccttttggttatcatatgtggtggcagcgtccccttgcttgtttagggat 3417557  T
119 tggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaaccttgttttgtctcctttg 200  Q
    || |       |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
3417556 tgac-------tgatgtattttttgttgatgtcttttgtggtttgattgaaactattttgtaaccttgttttgtctcctttg 3417482  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 41611206 - 41611088
Alignment:
82 atttgtggtggcatcgtccccttgcttgtttagggattggctgatgtatgatgtatttttcgttcatgtcttttgtggtttgattggaactattttgtaa 181  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
41611206 atttatggcggcagcgtccccttgcttgtttagggattggctgatgtatgatgtatttttcgttcatatcttttgtggtttgattggaactattttgtaa 41611107  T
182 ccttgttttgtctcctttg 200  Q
    | |||||||||||||||||    
41611106 ctttgttttgtctcctttg 41611088  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 841673 - 841560
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaat--gtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttaggg 116  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||  |||||| |||||||||| ||||||||||||||||| |||    
841673 aggttaaaattacatctctcaaatggttgaaagcaaaaaatatgtgtgctttccatttgtgtatcatatgtggtggcaacgtccccttgcttgtttgggg 841574  T
117 attggctgatgtat 130  Q
    |||| |||||||||    
841573 attgactgatgtat 841560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 28639230 - 28639313
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
28639230 tggttgaaagccaaaaatgtgtgctttccttttggttatcatttatggtggcagcatccccttgtttgtttagggataggctga 28639313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 2680816 - 2680716
Alignment:
29 tacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    |||||||||||||||||||||||||  |||||| |||||||| |||||||||||| |||||||||| || |||||||| ||||| |||||||||| ||||    
2680816 tacatctctcaaatggttgaaagcattaaatgtatgctttccatttggttatcatatgtggtggcagcgcccccttgcatgttt-gggattggcttatgt 2680718  T
129 at 130  Q
    ||    
2680717 at 2680716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 10468892 - 10468809
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctga 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| | | |||||||| |||||||||||| ||||||    
10468892 tggttgaaagctaaaaatgtgtgctttccttttggttatcatttatggtggaagcatccccttgtttgtttagggataggctga 10468809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 26501497 - 26501413
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgt-ccccttgcttgtttagggattggctga 125  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||| | | ||||||| |||||||||||| ||||||    
26501497 tggttgaaagctaaaaatgtgtgctctccttttggttatcatttatggtggcagcatcccccttgtttgtttagggataggctga 26501413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 38707237 - 38707183
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatc 96  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||    
38707237 tggttgaaagctagaaatgtttgctttccttttggttatcatatgtggtggcatc 38707183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 42495389 - 42495283
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||||||||||||||||||    ||| ||||||| ||||||||||| ||| |||||||||||||| ||||||||  | | ||||||| |||||| |||||    
42495389 aggttaagattacatctctttggtggctgaaagccaaaaatgtgtgtttttcttttggttatcatatgtggtgg--tagcccccttg-ttgtttggggat 42495293  T
119 tggctgatgt 128  Q
    || |||||||    
42495292 tgactgatgt 42495283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 16422154 - 16422240
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    ||||||||||| ||||||||||| ||| || ||| || |||| |||||||||| | |||||||| ||||||  |||||| |||||||    
16422154 tggttgaaagctaaaaatgtgtgtttttctcttgattgtcatatgtggtggcagcatccccttgtttgtttgaggattgactgatgt 16422240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 33023571 - 33023621
Alignment:
46 tgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatc 96  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||    
33023571 tgaaagctaaaaatgtgtgttttccttttggttatcatatgtggcggcatc 33023621  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 40526010 - 40526065
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatt-tgtggtggcatc 96  Q
    ||||||||||| |||||||| || |||| |||||||||||||| ||||||||||||    
40526010 tggttgaaagctaaaaatgtatgttttctttttggttatcattatgtggtggcatc 40526065  T

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Target: scaffold0217 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 8249 - 8355
Alignment:
19 aggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggat 118  Q
    |||| |||||||| ||||| |  ||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| || ||||| | |||||| |||||    
8249 aggtcaagattacttctcttacctggttgaaagctaaaaatgtttgctttccttttggttaccatatgtggtggcagcgacccctagattgtttggggat 8348  T
119 tggctga 125  Q
    |||||||    
8349 tggctga 8355  T

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Target: scaffold0394 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 5261 - 5347
Alignment:
42 tggttgaaagcaaaaaatgtgtgctttccttttggttatcatttgtggtggcatcgtccccttgcttgtttagggattggctgatgt 128  Q
    ||||||||||| |||||||| || |||||||||||||||||||| ||||  || | |||| ||| |||||| ||||||| |||||||    
5261 tggttgaaagctaaaaatgtatgttttccttttggttatcatttatggtaacagcatccctttgtttgtttggggattgactgatgt 5347  T

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