View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11668_low_9 (Length: 659)
Name: NF11668_low_9
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 5444930 - 5445566
Alignment:
| Q |
18 |
aatccctcaacacttggccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgttctcttaggcctataaaaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5444930 |
aatccctcaacacttgcccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgttctcttatgcctataaaaa |
5445029 |
T |
|
| Q |
118 |
ctaccttttgatcaatcagatccatattctcagttcactaaccaaaacgccattcttcttttgttctctcctctcaaattaagtgcaatggcaacaagaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445030 |
ctaccttttgatcaatcagatccatattctcggttcactaaccaaaacaccattcttcttttgttctctcctctcaaattaagtgcaatggcaacaagaa |
5445129 |
T |
|
| Q |
218 |
aaagcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaagggaaccg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445130 |
aaagcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaagggaaccg |
5445229 |
T |
|
| Q |
318 |
tgtcaccccttcttacgttgccttcaccgacactgaaagattaataggcgatgctgccaaaaaccaattagtcaaaaatccccacaacactgtttttgat |
417 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
5445230 |
tgtcaccccttcttacgttgccttcactgacactgaaagattaataggcgatgctgccaaaaaccaattagccaaatatccccacaacactgtttttgat |
5445329 |
T |
|
| Q |
418 |
gccaaacgtctgattggccgtcgattctctgaccaaacagtccaacaagacataaagctttggccttttaaagttgttccgaaccacaaagacaaaccca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445330 |
gccaaacgtctgattggccgtcgattctctgaccaaacagtccaacaagacataaagctttggccttttaaagttgttccgaaccacaaagacaaaccca |
5445429 |
T |
|
| Q |
518 |
tgattgttgtcaattacaaaggccaagagaaacatttttcacctcaagagatatcttccatggtgttgtctaagttaaaggaagttgctgaaacttattt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445430 |
tgattgttgtcaattacaaaggccaagagaaacatttttcacctcaagagatatcttccatggtgttgtctaagttaaaggaagttgctgaaacttattt |
5445529 |
T |
|
| Q |
618 |
gggtcatgaagtgaacaatgctgttatctctgctcct |
654 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5445530 |
gggtcatgaagtgaacaatgctgttatcactgttcct |
5445566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 310
Target Start/End: Complemental strand, 5441182 - 5440993
Alignment:
| Q |
123 |
ttttgatcaatcagatccatattctcagttcactaaccaaaacgccattcttcttttgttctctcctctcaaattaag---tgcaatggcaacaagaaaa |
219 |
Q |
| |
|
|||| |||||||| ||||| ||| |||||| |||| ||||||| |||| ||||||||||||||||||||||| | || |||||| || |||| |
|
|
| T |
5441182 |
tttttatcaatcacatccagattttcagtttactacccaaaacatcatt-ttcttttgttctctcctctcaaactctcgtttgtcgtggcaataacaaaa |
5441084 |
T |
|
| Q |
220 |
agcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaag |
310 |
Q |
| |
|
|| |||||||| ||||| ||| |||| |||| ||||||||||||| || ||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
5441083 |
agaaaagccattggcatcgacattggcacaacctacagctgcatttgagagtggcaacacaatcatgttgagatcattccaaacgaccaag |
5440993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 10688218 - 10688291
Alignment:
| Q |
18 |
aatccctcaacacttggccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgtt |
99 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10688218 |
aatcccacaacacttgcacaattattctccttgtatattttccatac--------aattccccaacttttctgaaaaatgtt |
10688291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University