View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_high_10 (Length: 369)
Name: NF11669_high_10
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 45107754 - 45107396
Alignment:
| Q |
1 |
aaagagtccattgaaaaaggtataatactgctaggacacaatacaacttcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctg |
100 |
Q |
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| T |
45107754 |
aaagagtccattgaaaaaggtataatactgctaggacacaatacaacttcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctg |
45107655 |
T |
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| Q |
101 |
aacttggaagattagcattatctgttgctttggttggtgagatattgagtaacatttttataactgttacctcaactctgcttgatcagggtcattatat |
200 |
Q |
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| T |
45107654 |
aacttggaagattagcattatctgttgctttggttggtgagatattgagtaacatttttataactgttacctcaactctgcttgatcagggtcattatat |
45107555 |
T |
|
| Q |
201 |
ttcacctgtcatgaggttgggatatttatttgccatcactctcttcattttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45107554 |
ttcacctgtcatgaggttgggatatttatttgccatcactctcttcattttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaa |
45107455 |
T |
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| Q |
301 |
ggaaaagaagttaaggatatttacatcaacattgttattgggattctcttttgtctgtg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45107454 |
ggaaaagaagttaaggatatttacatcaacattgttattgggattctcttttgtttgtg |
45107396 |
T |
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