View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_high_12 (Length: 356)
Name: NF11669_high_12
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 50613789 - 50613460
Alignment:
| Q |
16 |
ttaagcttatgaaggaaaacttgatatagtgatagaaaatggacatgaagaagtacatgtttggttcaagaagggaagcaaggttaggtaggagctacac |
115 |
Q |
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| T |
50613789 |
ttaagcttatgaaggaaaacttgatatagtgatagaaaatggacatgaagaagtacatgtttggttcaagaagggaagcaaggttaggtaggagctacac |
50613690 |
T |
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| Q |
116 |
aacaaagacaaactatcatagcaatatttcaccaagcaactatgatggcagcnnnnnnncagtatggcagaagatttggaaaaagctaaaaagagataag |
215 |
Q |
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| T |
50613689 |
aacaaagacaaattatcatagcaatatttcaccaagcaactatgatggtagcaaaaaaacagtatggcagaagatttggaaaaagctaaaaagagataag |
50613590 |
T |
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| Q |
216 |
aagaaagttttcaattctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttgatcatggaacaggtt |
315 |
Q |
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| T |
50613589 |
aagaaagttttcaattctccttctccttctactatagttgaagatggtgtatcatatgatcaagatacatactcaatgaattttgatcatggaacaggtt |
50613490 |
T |
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| Q |
316 |
ggatggaaccagataatctccctcgttcat |
345 |
Q |
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| T |
50613489 |
ggatggaaccagataatctccctcgttcat |
50613460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 1025822 - 1025895
Alignment:
| Q |
270 |
tatgatcaagatacatactcaatgaattttgatcatggaacaggttggatggaaccagataatctccctcgttc |
343 |
Q |
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| T |
1025822 |
tatgatgaagaatcatactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttc |
1025895 |
T |
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