View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_high_23 (Length: 247)
Name: NF11669_high_23
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_high_23 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 26857458 - 26857686
Alignment:
| Q |
19 |
cacactcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaatgcaaaatcactccctaatcaacacaaccttcactccataagattc |
118 |
Q |
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| T |
26857458 |
cacactcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaatgcaaaatcactccctaatcaacacaaccttcactccataagattc |
26857557 |
T |
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| Q |
119 |
ccccaatctgaaaattaggtcaaaatatcaactacagtaaaaaacaaagtaatgaaagcacaaaacctcgttaacttcttcaacatcagcatgaacatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26857558 |
ccccaatctgaaaattaggtcaaaatatcaactacagtaaaaaacaaagtaatgaaagcacaaaacctcgttaacttcttcaacatcagcatgaacatca |
26857657 |
T |
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| Q |
219 |
atcctcacatgacattgcggacacggaaa |
247 |
Q |
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| T |
26857658 |
atcctcacatgacattgcggacacggaaa |
26857686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 34633476 - 34633709
Alignment:
| Q |
22 |
actcatcagttaactcaacagcaactaatcaaatcaaagtcacataaacaatgcaaaatcactccctaatcaacacaaccttcactccataagattcccc |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34633476 |
actcgtcagttaactcaacagcaactaatcaaatcaaagtcacataaacaatgcaaaatcactccctaatcaacacaaccttcactccataagattcccc |
34633575 |
T |
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| Q |
122 |
caatctgaaaattaggtcaaaat--------atcaactacagtaaaaaacaaagtaatgaaagcacaaaacctcgttaacttcttcaacatcagcatgaa |
213 |
Q |
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| T |
34633576 |
caatctgaaaattaggtcaaaatcaaatcaaatcaactacagtaaaaaacaaagtaacgaaagcacaaaacctcgttaacttcttcaacatcagcatgaa |
34633675 |
T |
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| Q |
214 |
catcaatcctcacatgacattgcggacacggaaa |
247 |
Q |
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| T |
34633676 |
catcaatcctcacatgacattgcggacacggaaa |
34633709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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