View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_high_28 (Length: 241)

Name: NF11669_high_28
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_high_28
NF11669_high_28
[»] chr5 (3 HSPs)
chr5 (19-204)||(37894385-37894570)
chr5 (168-241)||(37894311-37894384)
chr5 (76-173)||(28521356-28521453)
[»] chr6 (1 HSPs)
chr6 (79-147)||(9729813-9729881)
[»] chr8 (2 HSPs)
chr8 (71-173)||(35861069-35861169)
chr8 (76-147)||(5099808-5099879)
[»] chr7 (2 HSPs)
chr7 (79-142)||(15011366-15011429)
chr7 (79-140)||(36801163-36801224)
[»] chr2 (2 HSPs)
chr2 (79-147)||(42428168-42428236)
chr2 (79-147)||(41993462-41993530)
[»] chr4 (1 HSPs)
chr4 (69-142)||(23860498-23860571)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 37894570 - 37894385
Alignment:
Q  19 aattacgcatattgcactcacgatgacttttttagatcaaatcggtcgatcactaaatgtgtgtttggattagtttttggaggctcatttccacttccca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37894570 aattacgcatattgcactcacgatgacttttttagatcaaatcggtccatcactaaatgtgtgtttggattagtttttggaggctcatttccacttccca 37894471  T
Q  119 atgcactttaaacgtgaaaattgtgaagccactattgctagcttctactttaaacacgtgtatgttgtcaatttgccgtaaaaaca 204  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37894470 atgcactttaaacgtgaaaattatgaaaccactgttgctagcttctactttaaacgcgtgtatgttgtcaatttgccgtaaaaaca 37894385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 37894384 - 37894311
Alignment:
Q  168 ttaaacacgtgtatgttgtcaatttgccgtaaaaacaaacatgttataaatcatagtttaagcagttattacac 241  Q
    |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  37894384 ttaaacgcgtgtatgttgtcaatttgcggtaaaaacaaacatgctataaatcatagtttaagcagttattacac 37894311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 28521453 - 28521356
Alignment:
Q  76 tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagccactattgctagcttctactttaaac 173  Q
    ||||| ||| |||||| || | || |||||||||||||| ||||| |||||||||| |||||||| |||||  || |||  |||||||||||||||||    
T  28521453 tgtgtatttagattagcttatagaagctcatttccactttccaattcactttaaacatgaaaattatgaagttacaattaatagcttctactttaaac 28521356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 9729881 - 9729813
Alignment:
Q  79 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 147  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9729881 gtgtttggattagcttttggaggctcatctccacttcccaatgcactttaaacgtgaaaattgtgaagc 9729813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 35861169 - 35861069
Alignment:
Q  71 ctaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagccactattgctagcttctacttta 170  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||| ||||  ||||| ||||||||| ||||||||| |||  ||| |||||| |||    
T  35861169 ctaagtgtgtatttggattagcttttggaggctcatttccacttcccagtgca--ttaaatgtgaaaattatgaagccacaattagtagtttctacctta 35861072  T
Q  171 aac 173  Q
    |||    
T  35861071 aac 35861069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 5099808 - 5099879
Alignment:
Q  76 tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 147  Q
    |||||||||||||||| |||||||| ||||||| |||||    |||||||||||| ||||||||| ||||||    
T  5099808 tgtgtgtttggattagcttttggagactcattttcacttttagatgcactttaaaagtgaaaattatgaagc 5099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 15011366 - 15011429
Alignment:
Q  79 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgt 142  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  15011366 gtgtttggattagcttttggaggctcatttcaacttctcaatgcactttaaatgtgaaaattgt 15011429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 36801163 - 36801224
Alignment:
Q  79 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt 140  Q
    |||||| |||| ||||||  ||| | ||||| ||||||||||||||||||||| ||||||||    
T  36801163 gtgtttcgatttgtttttataggtttatttctacttcccaatgcactttaaacatgaaaatt 36801224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 42428236 - 42428168
Alignment:
Q  79 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 147  Q
    ||||||||||||  |||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  42428236 gtgtttggattaacttttggagcctcatttccactttccaatgcactttaaatgtgaaaaatgtgaagc 42428168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 41993462 - 41993530
Alignment:
Q  79 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 147  Q
    ||||||||||| | ||||| |||||||||| |||||  ||||  |||||||||| ||||||||||||||    
T  41993462 gtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgtgaagc 41993530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 23860498 - 23860571
Alignment:
Q  69 cactaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgt 142  Q
    |||||| || |||||||||||||||||| |||| |||||| |||||  ||||||| |||||||| |||||||||    
T  23860498 cactaagtgggtgtttggattagtttttagaggttcattttcacttttcaatgcattttaaacgcgaaaattgt 23860571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University