View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_high_30 (Length: 238)

Name: NF11669_high_30
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_high_30
NF11669_high_30
[»] chr1 (31 HSPs)
chr1 (4-206)||(9318270-9318472)
chr1 (4-206)||(9255008-9255210)
chr1 (4-202)||(9319834-9320032)
chr1 (4-202)||(9350151-9350349)
chr1 (11-198)||(9486176-9486363)
chr1 (11-202)||(9432824-9433015)
chr1 (11-202)||(9399564-9399755)
chr1 (5-129)||(9384230-9384354)
chr1 (11-202)||(9453811-9454002)
chr1 (5-131)||(9234040-9234166)
chr1 (8-204)||(8932031-8932227)
chr1 (14-206)||(8955951-8956143)
chr1 (8-131)||(9056564-9056687)
chr1 (8-131)||(9082523-9082646)
chr1 (8-124)||(9104975-9105091)
chr1 (17-202)||(8941949-8942134)
chr1 (8-129)||(9142855-9142976)
chr1 (8-124)||(9096793-9096909)
chr1 (8-206)||(8920624-8920822)
chr1 (8-129)||(8999668-8999789)
chr1 (14-129)||(8964517-8964632)
chr1 (14-128)||(9488556-9488670)
chr1 (5-128)||(10979330-10979453)
chr1 (8-129)||(8874052-8874173)
chr1 (8-129)||(9152408-9152529)
chr1 (5-128)||(10974252-10974375)
chr1 (5-128)||(11010896-11011019)
chr1 (14-128)||(9463962-9464075)
chr1 (5-128)||(10901595-10901718)
chr1 (5-128)||(11005003-11005126)
chr1 (5-55)||(11007807-11007857)
[»] chr6 (1 HSPs)
chr6 (4-206)||(15927176-15927378)
[»] chr3 (1 HSPs)
chr3 (2-206)||(9159520-9159724)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 9318270 - 9318472
Alignment:
Q  4 tttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttgga 103  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  9318270 tttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggccgatgtatatagctttgga 9318369  T
Q  104 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9318370 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattga 9318469  T
Q  204 ttg 206  Q
    |||    
T  9318470 ttg 9318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 9255008 - 9255210
Alignment:
Q  4 tttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttgga 103  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9255008 tttaaccgcagcaagggggacaattggatacatggctcctgaattgttctaccaaaatattggaggagtatcgtacaaggccgatgtatatagctttgga 9255107  T
Q  104 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattga 203  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9255108 atgcttttgattgaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttatgatcaattga 9255207  T
Q  204 ttg 206  Q
    |||    
T  9255208 ttg 9255210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 9320032 - 9319834
Alignment:
Q  4 tttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttgga 103  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||    
T  9320032 tttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcgga 9319933  T
Q  104 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9319932 atgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattg 9319834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 9350349 - 9350151
Alignment:
Q  4 tttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttgga 103  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||    
T  9350349 tttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcgga 9350250  T
Q  104 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9350249 atgcttttgatggaaatcgcaagtaagaaaagaaatttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattg 9350151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 9486176 - 9486363
Alignment:
Q  11 gcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttt 110  Q
    ||||||||||| ||||| || |||||||||||||||||||||||| ||||||| |||||  |||| |||||||| ||  | |||||||||||||||||||    
T  9486176 gcagcaagaggaacaatcggttacatggctcctgaattgttctaccaaaatatcggaggaatatcatacaaggctgacatgtatagctttggaatgcttt 9486275  T
Q  111 tgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatca 198  Q
    |||| |||||||||||||  | ||||||||| ||| ||||||| || | |||||||||| ||| ||||||| ||||||||||| ||||    
T  9486276 tgattgaaatggcaagtagaagaagaaatttgaatacacatgctgagcattcaagtcaactttactttcccttttggatttatgatca 9486363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 9432824 - 9433015
Alignment:
Q  11 gcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttt 110  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||  |  ||||  ||||||||||||| ||||| |||||||||||||    
T  9432824 gcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttt 9432923  T
Q  111 tgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    |||| ||||| |||||||  | ||||||||| ||| ||||||| || | |||||||||| |||  || ||| ||||||||||| ||||||||    
T  9432924 tgattgaaatcgcaagtagaagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatcaattg 9433015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 9399755 - 9399564
Alignment:
Q  11 gcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttt 110  Q
    ||||||||||| |||||||| ||||||||||||||| |||||| | |||||||||| ||  |||| || ||||| ||||| ||||||||||| |||||||    
T  9399755 gcagcaagaggaacaattggttacatggctcctgaactgttcttccaaaatattgggggaatatcatataaggctgatgtgtatagctttggtatgcttt 9399656  T
Q  111 tgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    |||| ||||| ||||||| || ||||||||| ||| ||||||| || | |||||||||| |||  || ||| ||||||||||| ||||||||    
T  9399655 tgattgaaattgcaagtaggagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatcaattg 9399564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 9384354 - 9384230
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    |||||||| |||||||| ||  | || ||||||||||||||| ||||||||||||||||||| || || || |||||||| |||||||||||||||||||    
T  9384354 ttaactgcggcaagaggaactttgggttacatggctcctgaactgttctacaaaaatattggtggagtgtcttacaaggctgatgtatatagctttggaa 9384255  T
Q  105 tgcttttgatggaaatggcaagtaa 129  Q
    |||||||||||||||||||| ||||    
T  9384254 tgcttttgatggaaatggcaggtaa 9384230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 9453811 - 9454002
Alignment:
Q  11 gcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttt 110  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||  |  ||||  ||||||||||||| ||||| ||||||||||||     
T  9453811 gcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttc 9453910  T
Q  111 tgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    |||| ||||| ||||||| ||  |||||||| ||| ||||||| || | |||||| ||| |||   | ||| ||||||||||| ||||||||    
T  9453911 tgattgaaattgcaagtaggagtagaaatttgaattcacatgctgagcattcaagccaactttatatccccttttggatttatgatcaattg 9454002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 9234040 - 9234166
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    |||||||| |||||||| ||  | || ||||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| || |||||||    
T  9234040 ttaactgcggcaagaggaactttgggttacatggctcctgaattgttctacaaaaatattggtggagtgtcgtacaaagctgatgtatacagttttggaa 9234139  T
Q  105 tgcttttgatggaaatggcaagtaaga 131  Q
    |||||||||||||||||||| ||||||    
T  9234140 tgcttttgatggaaatggcaggtaaga 9234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 8932227 - 8932031
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| |||||||| |||||||| || |||||||||||||||||||||||    || || || ||||||||||| ||||||||||||||||    
T  8932227 actgctgcaagaggaacaattggttacatggcaccagaattgttctacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgc 8932128  T
Q  108 ttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattgat 204  Q
    | || |||||||| ||||  | || ||||||||| ||  || |||| |||  |||||| |||||||||||||||  ||||||||| ||| |||||||    
T  8932127 tcttaatggaaatagcaaacaggagaagaaatttgaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattgat 8932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 8956143 - 8955951
Alignment:
Q  14 gcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttttga 113  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||    || || || ||||||||||| ||||||||||||||||| || |    
T  8956143 gcaagaggaacaattggttacatggctccggaattattctacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgctcttaa 8956044  T
Q  114 tggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattgattg 206  Q
    ||||||| ||||  | || ||||||||| ||  || |||| |||  |||||| |||||||||||||||  ||||||||| ||| |||||||||    
T  8956043 tggaaatagcaaacaggagaagaaatttgaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattgattg 8955951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 9056687 - 9056564
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    |||||||| | ||| ||||||||||| ||||||||||||||||| |||||||||||||| || || ||||| ||||| ||||| ||||| ||||| ||||    
T  9056687 actgcagccaaaggcacaattggatatatggctcctgaattgttttacaaaaatattggtggagtgtcgtataaggctgatgtttatagttttggtatgc 9056588  T
Q  108 ttttgatggaaatggcaagtaaga 131  Q
    ||||||||||||||||||| ||||    
T  9056587 ttttgatggaaatggcaagcaaga 9056564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 9082523 - 9082646
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    |||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| || || || ||||||||||| ||||| ||||| ||||| ||||    
T  9082523 actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgc 9082622  T
Q  108 ttttgatggaaatggcaagtaaga 131  Q
    |||||||||| |||||||| ||||    
T  9082623 ttttgatggagatggcaagcaaga 9082646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9104975 - 9105091
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || || || || ||||| ||||| ||||||||||| ||||    
T  9104975 actgctgcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaggctgatgtttatagctttgggatgc 9105074  T
Q  108 ttttgatggaaatggca 124  Q
    |||||||||| ||||||    
T  9105075 ttttgatggagatggca 9105091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 8942134 - 8941949
Alignment:
Q  17 agagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttttgatgg 116  Q
    ||||| |||||||| |||||||| || |||||||||||||||||||||||    || || || || |||||||| ||||||||||||||||| || ||||    
T  8942134 agaggtacaattggttacatggcaccagaattgttctacaaaaatattggtaaagtttcctataaagccgatgtgtatagctttggaatgctcttaatgg 8942035  T
Q  117 aaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattg 202  Q
    |||| ||||  | || ||||||||||||  || |||| |||  |||||| |||||||||||||||  ||||||||| ||| |||||    
T  8942034 aaatagcaaacaggagaagaaatttaaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattg 8941949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 9142855 - 9142976
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    |||||||||||||| || |||||||| |||||||| || |||||||||||||||||||| || || || || ||||||||||| ||||| || || ||||    
T  9142855 actgcagcaagaggtactattggatatatggctccggagttgttctacaaaaatattgggggagtgtcctataaggccgatgtttatagtttcgggatgc 9142954  T
Q  108 ttttgatggaaatggcaagtaa 129  Q
    |||||||||| |||||||||||    
T  9142955 ttttgatggagatggcaagtaa 9142976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9096793 - 9096909
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || || || || || || ||||| ||||||||||| ||||    
T  9096793 actgctgcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaagctgatgtttatagctttgggatgc 9096892  T
Q  108 ttttgatggaaatggca 124  Q
    |||||||||| ||||||    
T  9096893 ttttgatggagatggca 9096909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 8920822 - 8920624
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| |||||||| |||||||| || || ||||||||||||||||||||    || || || ||||||||||||||||||||||||||||    
T  8920822 actgctgcaagaggaacaattggttacatggcaccagagttgttctacaaaaatattggtaaagtctcctataaggccgatgtatatagctttggaatgc 8920723  T
Q  108 ttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattgattg 206  Q
    | ||||||||||| ||||  | || ||||||||| ||  || ||||  ||  ||||   |||||||||||||||  |||||| || ||| |||||||||    
T  8920722 tcttgatggaaatagcaaacaggagaagaaatttgaactcaaatgcaaatgattcagaccaaattttctttccctattggatctacaatgaattgattg 8920624  T

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Target: chr1; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 8999789 - 8999668
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| || |||||||| |||||||| ||||||||||| ||||||||||| || || || || ||||| ||||| ||||||||||| ||||    
T  8999789 actgcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcttataaggctgatgtttatagctttgggatgc 8999690  T
Q  108 ttttgatggaaatggcaagtaa 129  Q
    |||||||||| |||||| ||||    
T  8999689 ttttgatggagatggcaggtaa 8999668  T

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Target: chr1; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 8964632 - 8964517
Alignment:
Q  14 gcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttttga 113  Q
    |||||||| || |||||||| |||||||| ||||||||||| ||||||||||| || || || || ||||| ||||| ||||||||||| ||||||||||    
T  8964632 gcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcctataaggctgatgtttatagctttgggatgcttttga 8964533  T
Q  114 tggaaatggcaagtaa 129  Q
    |||| |||||| ||||    
T  8964532 tggagatggcaggtaa 8964517  T

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Target: chr1; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 9488670 - 9488556
Alignment:
Q  14 gcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttttga 113  Q
    |||||||| || || ||||||||||| || ||||||||||| || ||||||||||| ||||||||||| || ||||| ||||||||||||||| | || |    
T  9488670 gcaagaggaactatgggatacatggcaccagaattgttctataagaatattggaggagtatcgtacaaagcagatgtttatagctttggaatgttgttaa 9488571  T
Q  114 tggaaatggcaagta 128  Q
    |||||||||| ||||    
T  9488570 tggaaatggcgagta 9488556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 10979453 - 10979330
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||| ||||     |||| ||||| || ||||||||||| ||||| |    
T  10979453 ttaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttggga 10979354  T
Q  105 tgcttttgatggaaatggcaagta 128  Q
    || | |||||||| ||||||||||    
T  10979353 tgttgttgatggagatggcaagta 10979330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 8874052 - 8874173
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    ||||| |||||||| || |||||||| |||||||| |||||||| || ||||||||||| || || || || ||||| ||||| ||||| ||||| ||||    
T  8874052 actgcggcaagaggtaccattggatatatggctccagaattgttttataaaaatattggtggagtgtcctataaggctgatgtttatagttttgggatgc 8874151  T
Q  108 ttttgatggaaatggcaagtaa 129  Q
    |||||||||  |||||| ||||    
T  8874152 ttttgatggtgatggcaggtaa 8874173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 9152408 - 9152529
Alignment:
Q  8 actgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgc 107  Q
    |||||| ||||| | ||||||||||| |||||||  |||||||| |||| |||||| || || || || || ||||||||||| ||||| ||||| ||||    
T  9152408 actgcatcaagatgtacaattggatatatggctctagaattgttttacataaatatcgggggagtgtcctataaggccgatgtttatagttttgggatgc 9152507  T
Q  108 ttttgatggaaatggcaagtaa 129  Q
    |||||||||| ||| |||||||    
T  9152508 ttttgatggagatgacaagtaa 9152529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 10974375 - 10974252
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    |||||||| |||||||| || |||||||||||||| |||||| ||||||||| |||||||||     |||| ||||| || ||||| ||||||||||| |    
T  10974375 ttaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatcttacaaagctgatgtctatagctttggga 10974276  T
Q  105 tgcttttgatggaaatggcaagta 128  Q
    || | || ||||| ||||| ||||    
T  10974275 tgttgttaatggagatggcgagta 10974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 11011019 - 11010896
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    ||||||||||||||||| || |||||||| ||||| |||||| | ||||||| |||| ||||     |||| ||||| || ||||||||||| ||||| |    
T  11011019 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttggga 11010920  T
Q  105 tgcttttgatggaaatggcaagta 128  Q
    || | |||||||| ||||||||||    
T  11010919 tgttgttgatggagatggcaagta 11010896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 9464075 - 9463962
Alignment:
Q  14 gcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaatgcttttga 113  Q
    |||||||| || || ||||||||||| || || |||||||| || || |||||||| ||||||||||| || ||||| |||||| |||||||| | || |    
T  9464075 gcaagaggaactatgggatacatggcaccagagttgttctataagaacattggaggagtatcgtacaaagcagatgtttatagc-ttggaatgttgttaa 9463977  T
Q  114 tggaaatggcaagta 128  Q
    |||||||||| ||||    
T  9463976 tggaaatggcgagta 9463962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 10901718 - 10901595
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    ||||| ||||||||||| || |||||||||||||| |||||||| ||||||| |||| | ||     ||||  |||| || ||||| ||||| |||||||    
T  10901718 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagttttggaa 10901619  T
Q  105 tgcttttgatggaaatggcaagta 128  Q
    || | |||||||| ||||||||||    
T  10901618 tgttgttgatggagatggcaagta 10901595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 11005003 - 11005126
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttggaa 104  Q
    ||||||||||||||||| || |||||||||||||| |||||| | ||||||| |||| | ||     ||||  |||| || ||||| ||||||||||| |    
T  11005003 ttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagctttggga 11005102  T
Q  105 tgcttttgatggaaatggcaagta 128  Q
    || | |||||||| ||||||||||    
T  11005103 tgttgttgatggagatggcaagta 11005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 11007857 - 11007807
Alignment:
Q  5 ttaactgcagcaagagggacaattggatacatggctcctgaattgttctac 55  Q
    ||||||||||||||||| || |||||||||||||| |||||| | ||||||    
T  11007857 ttaactgcagcaagaggaaccattggatacatggcccctgaactattctac 11007807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 15927176 - 15927378
Alignment:
Q  4 tttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttgga 103  Q
    |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  15927176 tttaactgcagcaagaggaacgattggatacatggctcctgaattattctacaaaaatattggaggagtttcgtataaggccgatgtatatagctttgga 15927275  T
Q  104 atgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattga 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||| ||  |||||||||||||||||||||    
T  15927276 atgcttttgatggaaatggcaagtaagagaagaaatttaaatccacatgcggatcgttcaagccaacttttcttccctttttggatttataatcaattga 15927375  T
Q  204 ttg 206  Q
    |||    
T  15927376 ttg 15927378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 9159724 - 9159520
Alignment:
Q  2 aatttaactgcagcaagagggacaattggatacatggctcctgaattgttctacaaaaatattggaggtgtatcgtacaaggccgatgtatatagctttg 101  Q
    |||||||||||||||||||| |||||||| || |||||||| || |||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||    
T  9159724 aatttaactgcagcaagaggaacaattggttatatggctcccgagttgttctacaaaaatattggtggagtatcatacaaggctgatgtttatagttttg 9159625  T
Q  102 gaatgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaatt 201  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||| |||||||||||  ||||||||||||||||||    
T  9159624 gaatgcttttgatggaaatggcaagtaagcgaagaaatttaaatccacatgcggatcgttcaagccaacttttctttccctattggatttataatcaatt 9159525  T
Q  202 gattg 206  Q
    |||||    
T  9159524 gattg 9159520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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