View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_high_32 (Length: 234)
Name: NF11669_high_32
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 52739311 - 52739415
Alignment:
| Q |
113 |
aaattaaaaattgtcatcatttaatctgcaaaacaactatatgctagattgttatccattttatatgttaggaaatctttaagaatgcttgataggtaaa |
212 |
Q |
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| T |
52739311 |
aaattaaaaattgtcataatttaatctgcaaaacaactatatgctagattgttatccattttatatgttaggaaatctttaagaatgcttgataggtaaa |
52739410 |
T |
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| Q |
213 |
atcat |
217 |
Q |
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||||| |
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| T |
52739411 |
atcat |
52739415 |
T |
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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 45392534 - 45392706
Alignment:
| Q |
28 |
aattaatgtgccgaaagacggacaacaaagatcaatatgtatcttatcattactaacaaaacttctaataccaagaggctaacagaaattaaaaattgtc |
127 |
Q |
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||||||||||| || |||| |||||| |||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
45392534 |
aattaatgtgc-gacagacagacaactaagatcaatatgtatcataccattactaacaaaacctctaatacaaagaggctaacagaaatt---------- |
45392622 |
T |
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| Q |
128 |
atcatttaatctgcaaaacaactatatgctagattgttatccattttatatgttaggaaatctttaagaatgcttgataggtaaaatcat |
217 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
45392623 |
------taatctgaaaaaaaactatatgctagattgttatccattttatataataggaaatctttaataatgcttgatatgtaaaatcat |
45392706 |
T |
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