View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_high_33 (Length: 222)

Name: NF11669_high_33
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_high_33
NF11669_high_33
[»] chr2 (4 HSPs)
chr2 (1-209)||(34690654-34690862)
chr2 (1-209)||(34713066-34713274)
chr2 (1-209)||(16231995-16232203)
chr2 (1-101)||(33860757-33860857)
[»] chr1 (12 HSPs)
chr1 (1-209)||(43066975-43067183)
chr1 (1-209)||(43083652-43083860)
chr1 (1-209)||(45983960-45984168)
chr1 (1-206)||(38138124-38138329)
chr1 (1-209)||(43044808-43045016)
chr1 (1-209)||(3300542-3300750)
chr1 (9-207)||(50912189-50912387)
chr1 (1-134)||(43076830-43076963)
chr1 (14-103)||(7891229-7891318)
chr1 (1-106)||(40034957-40035062)
chr1 (144-205)||(7891359-7891420)
chr1 (156-209)||(43076977-43077030)
[»] chr8 (5 HSPs)
chr8 (3-207)||(4619499-4619703)
chr8 (14-106)||(1846400-1846492)
chr8 (1-100)||(4297399-4297498)
chr8 (144-205)||(1846301-1846362)
chr8 (1-100)||(4787674-4787773)
[»] chr4 (1 HSPs)
chr4 (1-209)||(4231273-4231481)
[»] chr5 (1 HSPs)
chr5 (3-174)||(16348990-16349161)
[»] chr7 (1 HSPs)
chr7 (4-116)||(39242536-39242650)
[»] chr6 (2 HSPs)
chr6 (2-207)||(7519987-7520192)
chr6 (2-207)||(7529524-7529729)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 34690862 - 34690654
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34690862 tccatttgttcccatctctggttataagggagataacatcattgagcgctcgactaaccttgactggtacgaaggtcctacccttcttgaagctcttgac 34690763  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690762 caaatcgacgagcctaagaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 34690663  T
Q  201 ttgagactg 209  Q
    |||||||||    
T  34690662 ttgagactg 34690654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 34713274 - 34713066
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34713274 tccatttgttcccatctctggttataagggagataacatcattgagcgctcgactaaccttgactggtacgaaggtcctacccttcttgaagctcttgac 34713175  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34713174 caaatcgacgagcctaagaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 34713075  T
Q  201 ttgagactg 209  Q
    |||||||||    
T  34713074 ttgagactg 34713066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 16232203 - 16231995
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| |||| ||||||||| | |||||||||| ||||| ||||||||||| || || ||||||||| |||||||| |||||    
T  16232203 tccatttgttcccatctctggttttaagtgagataacatcgttgagcgctctactaaccttgactggtatgatgggcctacccttgttgaagctattgac 16232104  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    ||||||  ||||||||| |||||   |||||||||| || |||| || ||||| ||||||||||||||||||||| |||||||||||||||| |||||||    
T  16232103 caaatcagcgagcctaagaggcccgaaggcaagcctctgcgacttccccttcagcatgtctacaagattggaggtattggaactgtacctgtgggacgtg 16232004  T
Q  201 ttgagactg 209  Q
    |||||||||    
T  16232003 ttgagactg 16231995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33860857 - 33860757
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | |||||||||||   ||||||||||| ||||| |||||||||||| | ||||| |||||||||||||||||||||    
T  33860857 tccatttgttcccatctctggttttgagggagataacttgattgagcgctctactaatcttgactggtacaagggtcccacccttcttgaagctcttgac 33860758  T
Q  101 c 101  Q
    |    
T  33860757 c 33860757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 43066975 - 43067183
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  || |||||||| || || |||||||||||| | ||||| ||||||||||| || ||||||    
T  43066975 tccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggcccttgac 43067074  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| |||||||||| |||||||||| ||||||  |  |||||||||||||| |||||||||||||||||||  |||||||||| ||||| || ||||    
T  43067075 caaatcaacgagcctaagaggccttcagacaagcccctccgactaccacttcaagatgtctacaagattggaggaattggaactgtgcctgtggggcgtg 43067174  T
Q  201 ttgagactg 209  Q
    | |||||||    
T  43067175 tcgagactg 43067183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43083860 - 43083652
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  || |||||||| || || |||||||||||| | ||||| ||||||||||| || ||||||    
T  43083860 tccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggcacttgac 43083761  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| |||||||||| |||||||||| ||||||  |  |||||||||||||| |||||||||||||||||||  |||||||||| ||||| || ||||    
T  43083760 caaatcaacgagcctaagaggccttcagacaagcccctccgactaccacttcaagatgtctacaagattggaggaattggaactgtgcctgtggggcgtg 43083661  T
Q  201 ttgagactg 209  Q
    | |||||||    
T  43083660 tcgagactg 43083652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 45983960 - 45984168
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    |||| |||||||||||||||||| | |||||||||||   ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||||||| |||||    
T  45983960 tccaattgttcccatctctggttttgagggagataacttgattgagcgctctactaatcttgattggtacaagggtccaacccttcttgaagctattgac 45984059  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| |||||||||  ||||| |||| ||||||| | ||| ||||||||||  |||||||||||||||||||  | |||||||| ||||| |||||||    
T  45984060 caaatcaacgagcctatgaggccatcagacaagcctctcagaataccacttcaggatgtctacaagattggaggaatcggaactgtgcctgtgggacgtg 45984159  T
Q  201 ttgagactg 209  Q
    |||||||||    
T  45984160 ttgagactg 45984168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38138124 - 38138329
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | |||||||||||| |||||| ||||| ||||| |||||||||||  | ||||| |||||||||||||||||||||    
T  38138124 tccatttgttcccatctctggttttgagggagataacatcattgaacgctctactaaccttgactggtataagggtcccacccttcttgaagctcttgac 38138223  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| | |||||||| ||||  | || ||||||| |  || ||||||||||  |||||||||||||||||||  |||||||||| ||||| ||||| |    
T  38138224 caaatcaaggagcctaagaggctattagacaagcctctccgattaccacttcaggatgtctacaagattggaggaattggaactgtgcctgtgggacggg 38138323  T
Q  201 ttgaga 206  Q
    ||||||    
T  38138324 ttgaga 38138329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43045016 - 43044808
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  || |||||||| || || |||||||||||| | ||||| ||||||||||| || ||||||    
T  43045016 tccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggcccttgac 43044917  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| | |||||||| |||||||||| ||||||  |  |||||||||||||  |||||||||||||||||||  |||||||||| ||||| || ||||    
T  43044916 caaatcaatgagcctaagaggccttcagacaagcccctccgactaccacttcaggatgtctacaagattggaggaattggaactgtgcctgtggggcgtg 43044817  T
Q  201 ttgagactg 209  Q
    | |||||||    
T  43044816 tcgagactg 43044808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3300750 - 3300542
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  || |||||||| || || |||||||||||| | ||||||||||||||||| |||||||||    
T  3300750 tccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaatcttgactggtacaagggtcctacccttcttgaggctcttgac 3300651  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| |||||||||| ||||| |||| ||||||  |  | ||||| |||||  |||||||||||||||||||  |||| ||||| ||||| || ||||    
T  3300650 caaatcaacgagcctaagaggccatcagacaagcccctccgtctaccgcttcaggatgtctacaagattggaggaattgggactgtgcctgtggggcgtg 3300551  T
Q  201 ttgagactg 209  Q
    | |||||||    
T  3300550 tcgagactg 3300542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 50912387 - 50912189
Alignment:
Q  9 ttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgaccaaatcga 108  Q
    ||||||||||||||| | |||||||||||| |||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||||||| |||||| |    
T  50912387 ttcccatctctggttttgagggagataacatcattgagcgctctactaaccttgactggtacaaaggtcccacccttattgaagctcttgatcaaatcaa 50912288  T
Q  109 cgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgttgagac 207  Q
     |||||||| || || |||  || |||| |  || ||||||||||   |||||||||||||||||   |||||| ||||||||| |||||| |||||||    
T  50912287 ggagcctaatagaccatcacacatgcctctccgattaccacttcaggttgtctacaagattggagaaattggaattgtacctgtgggacgtattgagac 50912189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 43076830 - 43076963
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  || |||||||| || || ||| |||||||| | ||||| ||||||||||  || ||||||    
T  43076830 tccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttaactggtacaagggtccaacccttcttggggcccttgac 43076929  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagc 134  Q
    |||||| |||||||||| |||||||||| |||||    
T  43076930 caaatcaacgagcctaagaggccttcagacaagc 43076963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 7891229 - 7891318
Alignment:
Q  14 atctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgaccaa 103  Q
    |||||||||||  |||||||||||| ||||||||||||  |||| ||||| ||||||   ||||| ||||||||||||||||||||||||    
T  7891229 atctctggttacgagggagataacatcattgagcgctcttctaaccttgattggtacacgggtcccacccttcttgaagctcttgaccaa 7891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 40034957 - 40035062
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||| ||||||| ||||||| |   ||||| |||| |||||||||||| ||||| ||||| |||||| ||||||| |||||| |||||||| | |||    
T  40034957 tccatttattcccatatctggttttgttggagaaaacatcattgagcgctctactaaccttgattggtacaaaggtcccaccctttttgaagctatcgac 40035056  T
Q  101 caaatc 106  Q
    ||||||    
T  40035057 caaatc 40035062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 7891359 - 7891420
Alignment:
Q  144 taccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgttgag 205  Q
    ||||||||||| |||||||||||||||||||  |||||| ||| ||||| ||||| ||||||    
T  7891359 taccacttcaagatgtctacaagattggaggaattggaattgtgcctgtgggacgcgttgag 7891420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 43076977 - 43077030
Alignment:
Q  156 atgtctacaagattggaggtgttggaactgtacctgtcggacgtgttgagactg 209  Q
    ||||||||||| || ||||  |||||||||||||||| | ||||||||||||||    
T  43076977 atgtctacaagtttagaggaattggaactgtacctgtggcacgtgttgagactg 43077030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 4619703 - 4619499
Alignment:
Q  3 catttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgacca 102  Q
    ||||||||||||||||||||| | |||||||||||   |||||||| ||  |||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  4619703 catttgttcccatctctggttttgagggagataacttgattgagcgttcttctaatcttgactggtacgagggtcccacccttcttgaagctcttgacca 4619604  T
Q  103 aatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgtt 202  Q
    |||| |||||||||| ||||| |||  ||||||| |  || |||||||||   |||||||||||||||||||  |||||||||| ||||| ||| |||||    
T  4619603 aatcaacgagcctaataggccatcaaacaagcctctccgattaccacttcgggatgtctacaagattggaggaattggaactgtgcctgtgggatgtgtt 4619504  T
Q  203 gagac 207  Q
    |||||    
T  4619503 gagac 4619499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 1846492 - 1846400
Alignment:
Q  14 atctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgaccaaatc 106  Q
    |||||||||||  |||||||||||| |||||||| |||  |||| ||||||||||||   ||||| |||||||||||||||||||||||||||    
T  1846492 atctctggttacgagggagataacatcattgagcactcttctaaccttgactggtacacgggtcccacccttcttgaagctcttgaccaaatc 1846400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4297498 - 4297399
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||| ||||||||||| ||| | | |||||||||   ||||| ||||| |||||  ||||||||||| | ||||| ||||||||||||||| |||||    
T  4297498 tccatttattcccatctctagttttgacggagataacttgattgaccgctccactaattttgactggtacaagggtcccacccttcttgaagctattgac 4297399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 1846362 - 1846301
Alignment:
Q  144 taccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgttgag 205  Q
    ||||||||||| |||||||||||||||||||  |||||| ||| ||||| ||||| ||||||    
T  1846362 taccacttcaagatgtctacaagattggaggaattggaattgtgcctgtgggacgcgttgag 1846301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4787674 - 4787773
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||| ||| | | |||||||||   ||||| ||||| |||||  ||||||||||    ||||| ||||||||||||||| |||||    
T  4787674 tccatttgttcccatctctagttttgatggagataacttgattgaccgctccactaattttgactggtaaatgggtccgacccttcttgaagctattgac 4787773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4231481 - 4231273
Alignment:
Q  1 tccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgac 100  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||||| || || |||||||||||| | ||||| || |||||||| ||||||||     
T  4231481 tccatttgttcccatctctggttttgagggagataacatgattgagcgctctacaaatcttgactggtacaagggtccaacacttcttgaggctcttgat 4231382  T
Q  101 caaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtg 200  Q
    |||||| | |||||||| ||||| |||| ||||||  |  ||||||| |||||  |||||||||||||||||||  |||||||||| ||||| |||||||    
T  4231381 caaatcaatgagcctaagaggccatcagacaagcccctccgactacctcttcaggatgtctacaagattggaggaattggaactgttcctgtgggacgtg 4231282  T
Q  201 ttgagactg 209  Q
    |||||||||    
T  4231281 ttgagactg 4231273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 16349161 - 16348990
Alignment:
Q  3 catttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgacca 102  Q
    ||||||||||||||||||||| | |||||||||||    |||||| ||| || ||||||||  ||||| | ||||| ||||||||||||||||||||||     
T  16349161 catttgttcccatctctggttttgagggagataacttggttgagccctctacaaaacttgatgggtacaagggtcccacccttcttgaagctcttgaccg 16349062  T
Q  103 aatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggagg 174  Q
    |||| |||||||||| ||||  |||| ||||||| |  || ||||||||||   ||||||||||||||||||    
T  16349061 aatcaacgagcctaagaggctatcagacaagcctctccgattaccacttcagggtgtctacaagattggagg 16348990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 39242536 - 39242650
Alignment:
Q  4 atttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaa--gctcttgacc 101  Q
    |||||||||||||||||||| ||| |||||||||   ||||||||||| |||||  ||||||||||| |  |||| ||||||||||||  ||||||||||    
T  39242536 atttgttcccatctctggttttaacggagataacttgattgagcgctctactaatattgactggtacaacagtcccacccttcttgaagcgctcttgacc 39242635  T
Q  102 aaatcgacgagccta 116  Q
     | || |||||||||    
T  39242636 gattcaacgagccta 39242650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 7519987 - 7520192
Alignment:
Q  2 ccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgacc 101  Q
    ||||||||||| |||||||||| | | || || ||||  |||||| | || || || |||||||||||| | || || || || ||||| ||||||||||    
T  7519987 ccatttgttccaatctctggttttgaaggtgacaacatgattgagaggtctaccaaccttgactggtacaagggaccaactctccttgaggctcttgacc 7520086  T
Q  102 aaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgt 201  Q
    | ||| ||||||| || || ||  ||| ||||||  | || || ||| | ||| |||| ||||||||||| ||| |||||||||| || || ||||||||    
T  7520087 agatcaacgagcccaagagacccacagacaagcccctcaggcttccattgcaagatgtttacaagattggtggtattggaactgtgccagttggacgtgt 7520186  T
Q  202 tgagac 207  Q
    ||||||    
T  7520187 tgagac 7520192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 7529524 - 7529729
Alignment:
Q  2 ccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgacc 101  Q
    ||||||||||||||||| || | | | || || ||||  |||||| | || || || |||||||||||| | || || || || ||||| ||||||||||    
T  7529524 ccatttgttcccatctccggatttgaaggtgacaacatgattgagaggtccaccaaccttgactggtacaagggaccaactctccttgaggctcttgacc 7529623  T
Q  102 aaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgt 201  Q
    | ||| ||||||| || || ||  ||| ||||||  | || || ||| | ||| |||| ||||||||||| ||| |||||||||| || |||||||||||    
T  7529624 agatcaacgagcccaagagacccacagacaagcccctcaggcttccattgcaagatgtttacaagattggtggtattggaactgtgccagtcggacgtgt 7529723  T
Q  202 tgagac 207  Q
    ||||||    
T  7529724 tgagac 7529729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University