View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_high_7 (Length: 426)
Name: NF11669_high_7
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 38343412 - 38343827
Alignment:
| Q |
1 |
tggttgaagagttgttgcttcaaccaaaatgtttaattaaactttaccaacacttttgaataaaaccaaattatgttatcaatttgcagtatttttatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38343412 |
tggttgaagagttgttgcttcaaccaaaatgtttaattaaactttaccaacacttttgaataaaaccaaattatgttatcaatttgcggtatttttatca |
38343511 |
T |
|
| Q |
101 |
attttcttacaattttacacgcggttaaccgagtgtcgcagatgtaaagaaaattggatgtccatttcatgaaacatttttgctcaacaattgccattgg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343512 |
attttcttacaatgttacacgcggttaaccgagtgtcgcagatgtaaagaaaattggatgttcatttcatgaaacatttttgctcaacaattgccattgg |
38343611 |
T |
|
| Q |
201 |
agaatccaaatcaattggtagtttgcaatctaaccctatgactaatgctttttaacatagttcatgaaactatacttatccaactatgcctaatatttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343612 |
agaatccaaatcaattggtagtttgcaatctaaccctatgactaatgctttttaacatagttcatgaaactatacttatccaactatgcctaatatttca |
38343711 |
T |
|
| Q |
301 |
ccattgaccgcccnnnnnnnacttgttacaaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcat |
400 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343712 |
ccattgacccccctttttttacttgttagaaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcat |
38343811 |
T |
|
| Q |
401 |
ttgtctgtttcctttg |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38343812 |
ttgtctgtttcctttg |
38343827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 406
Target Start/End: Original strand, 38348836 - 38348913
Alignment:
| Q |
329 |
caaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcatttgtct |
406 |
Q |
| |
|
|||||||||||| |||| | | ||||||||||||| |||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
38348836 |
caaaacagcatctaaatactaaatttaatctgtctgcatctgcacatgaaggaaatgagttaggtgcttcatttgtct |
38348913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University