View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_1 (Length: 845)
Name: NF11669_low_1
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Complemental strand, 34897916 - 34897186
Alignment:
| Q |
1 |
ttgaaaatgaagtagtgactgataagggtcccactgtgggggtggaaagtgttaatgtcggtcctactgtgggggtggaaagtaatgatgtggggcatac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897916 |
ttgaaaatgaagtagtgactgatgagggtcccactgtgggggtgaaaagtgttaatgtgggtcctactgtgggggtggaaagtaatgatgtggggcatac |
34897817 |
T |
|
| Q |
101 |
tgaggtggaggaaagtgttgatgtgggacctgctgttttggaagagggactaaataatggtccaactgttttaattgtgggagttaatgaaagtgggcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34897816 |
tgaggtggaggaaagtgttgatgtgggccctgctgttttggaagagggactaaataatggtccaactgttttaaatgtggcagttaatgaaagtgggcct |
34897717 |
T |
|
| Q |
201 |
tctggtgtagtaaataactttgggcctcctattgatgaacatgaagagtatagggatgagtatgtggatgagaatgggtcaaaaggggatggaaatgaaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897716 |
tctggtgtagtaaataactttaggcctcctattgatgaacatgaagagtatagggatgagtatgtggatgagaatgggtcaaaaggggatggaaatgaaa |
34897617 |
T |
|
| Q |
301 |
gtgaagatagtgcactaggtgttggatttggagacccaaaagaagaagagctttgtggggatgatggttttggtgatgcaataggtgaagaaacacaaca |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34897616 |
gtgaagatagtgcaataggtgttggatttggagacccagaagaagaagagctttgtggggatgatggttttggtgatgcagtaggtgaagaaacacaac- |
34897518 |
T |
|
| Q |
401 |
agaagatgacttatttgctgactggatcaatgaaccttttgagaatattaggaatgtagaggaggtaaatgaagcagttgcagtaggaggtaatgacgta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34897517 |
--aagatgacttatttgctgactggatcaatgaaccttttgagaatattaggaatgtagaggaggtaaatgaagcagttgcagtaggaggtaatgaagta |
34897420 |
T |
|
| Q |
501 |
gtatctgaaacagaaagagtgacagataaagatagtgtagaagcaggacagtcaaaagagaaggggaaagaagcaagtggaagtaagcctaagaagaaaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34897419 |
gtatctgaaacagaaagagtgacagataaagatagtgcagaagcaggacagttaaaagagaaggggaaagaagcaagtggaagtaagcctaagaagaaaa |
34897320 |
T |
|
| Q |
601 |
gggatagaccaccaaagcaactacaacaacaaaaagttagtgaacatgtgtttgatgaagatctgattgccgagggagttaacaacactgagcagggtgg |
700 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34897319 |
ggggtagaccaccaaagaaactacaacaacaaaaagttagtgaacctgtgtttgatgaagatctgattgctgagggagttaacaacactgagcagggtgg |
34897220 |
T |
|
| Q |
701 |
accatttggtgtagttagagataggggtttgagt |
734 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
34897219 |
gccatctggtgtagttagagataggggtttgagt |
34897186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 60 - 532
Target Start/End: Original strand, 24504448 - 24504923
Alignment:
| Q |
60 |
ggtcctactgtgggggtggaaagtaatgatgtggggcatactgaggtggaggaaagtgttgatgtgggacctgctgttttggaagagggactaaataatg |
159 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||| | ||||| |||||||||||||||| ||||||| ||| ||||||||||||| ||| |||||||| |
|
|
| T |
24504448 |
ggtcctactgtgggagttgaaagtgttgatgtgggtcctactgtggtggaggaaagtgttcatgtgggccctactgttttggaagatggaacaaataatg |
24504547 |
T |
|
| Q |
160 |
gtccaactgttttaattgtgggagttaatgaaagtgggccttctggtgtagtaaataactttgggcctcctattgatgaacatgaagagtatagggatga |
259 |
Q |
| |
|
| || |||| ||||| | |||||||||||||||||||| ||||| ||| ||||||| |||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
24504548 |
gccccactgatttaaatatgggagttaatgaaagtgggtcttctagtggagtaaatgactttgagcctcctatttatggacatgaagagtatagggatga |
24504647 |
T |
|
| Q |
260 |
gtatgtggatgagaatgggtcaaaaggggatggaaatgaaagtgaagatagtgcactaggtgttggatttggagacccaaaaga---agaagagctttgt |
356 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||| |||||| |||| ||||||| | || |
|
|
| T |
24504648 |
gtatgtggatgaaaatggttcaaaaggggatggaaatgtaagtgaagacagtgcactaggtgtacaatttggggacccagaagaagaagaagagatctgc |
24504747 |
T |
|
| Q |
357 |
ggggatgatggttttggtgatgcaataggtgaagaaacacaacaagaagatgacttatttgctgactggatcaatgaaccttttgagaatattaggaatg |
456 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||| ||||| ||| |
|
|
| T |
24504748 |
agggaagatggttttggtgatgcagtagatgaagaaacacaacaagaagatgacttatttgctgaatggatctctgaaccagttgataattttagggatg |
24504847 |
T |
|
| Q |
457 |
tagaggaggtaaatgaagcagttgcagtaggaggtaatgacgtagtatctgaaacagaaagagtgacagataaaga |
532 |
Q |
| |
|
||||| |||| ||||||| || ||| ||||| || ||| ||| |||||||||| ||||||||||| ||||| |
|
|
| T |
24504848 |
aagaggtggtagttgaagcaattccagaaggagttactgaatctgtagctgaaacagatagagtgacagagaaaga |
24504923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 584 - 734
Target Start/End: Original strand, 24504948 - 24505098
Alignment:
| Q |
584 |
taagcctaagaagaaaagggatagaccaccaaagcaactacaacaacaaaaagttagtgaacatgtgtttgatgaagatctgattgccgagggagttaac |
683 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| || |||| ||||||| |
|
|
| T |
24504948 |
taaggctaagaagaagaggggtagaccaccaaagcaactacaacaacaaagagtaagtgaacctgtgtttgaagaagaattgacagctgaggtagttaac |
24505047 |
T |
|
| Q |
684 |
aacactgagcagggtggaccatttggtgtagttagagataggggtttgagt |
734 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24505048 |
aactttgagcagggtggaccatttggtgtagttagagatagggggttgagt |
24505098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 738 - 793
Target Start/End: Complemental strand, 34895439 - 34895384
Alignment:
| Q |
738 |
agtagtaactgttgcaatgactattgtcatgtgatgtaatgatgaaacttgtttat |
793 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34895439 |
agtagtaactgttgcaatgactattgttatgtgatgtaatgatgaaacttgtttat |
34895384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 24504447 - 24504504
Alignment:
| Q |
26 |
gggtcccactgtgggggtggaaagtgttaatgtcggtcctactgtgggggtggaaagt |
83 |
Q |
| |
|
|||||| |||||||| || ||||||||| |||| ||||||||||||| || ||||||| |
|
|
| T |
24504447 |
gggtcctactgtgggagttgaaagtgttgatgtgggtcctactgtggtggaggaaagt |
24504504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 738 - 830
Target Start/End: Original strand, 35663055 - 35663147
Alignment:
| Q |
738 |
agtagtaactgttgcaatgactattgtcatgtgatgtaatgatgaaacttgtttataattttctttatgtttattaattatatgttagtaatg |
830 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
35663055 |
agtagtaactgttgcaatgactattgttatgtgatgtaataatgaaacttgtttatgattttctttatgtttattgcttatatgttagtaatg |
35663147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 621
Target Start/End: Complemental strand, 3815603 - 3815549
Alignment:
| Q |
567 |
aaagaagcaagtggaagtaagcctaagaagaaaagggatagaccaccaaagcaac |
621 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
3815603 |
aaagaggccagtggaagtaagcctaagaagaagagaggaagaccaccaaagcaac |
3815549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 3815895 - 3815862
Alignment:
| Q |
239 |
acatgaagagtatagggatgagtatgtggatgag |
272 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
3815895 |
acatgaagaatatagggatgagtatgtggatgag |
3815862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University