View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_11 (Length: 362)
Name: NF11669_low_11
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 34627264 - 34627605
Alignment:
| Q |
1 |
tcatatacagacagactaacgcaataaaaaataagagtgctgctatttatcgcgaactcatcatcactgatggatttgtgattggtggaatataagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34627264 |
tcatatacagacagactaacgcaataaaaaataagagtgctgctatttatcgcgaactcatcatcactgatggatttgtgtttggtggaatataagagtg |
34627363 |
T |
|
| Q |
101 |
gttagatatatcaatagtagactttgctaggtacaaattgcatcgtattattcacacaaagtagcatttctcaataaatagccatagctacaatattagt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34627364 |
gttagatatatagatagtagactttgctaggtacaaattgcatcgtattattcacacaaagtagcatttctcaaaaaatagccatagctacaatattagt |
34627463 |
T |
|
| Q |
201 |
agtaactcatatttcaaaggatgaaactttgaatatgtgccaatgtgatgatttcattggtgaatttaaaatttaaatgcacatgtaaatgttatttgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34627464 |
agtaactcatatttcaaaggatgaaactttgaatatgtgccaatgtgatgatttcattggtgaatttaaaatttaaatgcacatgtaaatgttatttgtg |
34627563 |
T |
|
| Q |
301 |
ctttgaaactttatcctagagagtatttgggaccaactcata |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34627564 |
ctttgaaactttatcctagagagtatttgggaccaactcata |
34627605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University