View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_13 (Length: 304)
Name: NF11669_low_13
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 9220413 - 9220119
Alignment:
| Q |
3 |
tgattttcctaattccacggaattttggggatgtagctattcttttgctgttaaagatggatcctataatttttctgtttctcatttggataattttccg |
102 |
Q |
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| T |
9220413 |
tgattttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatggatcctataattttactgtttctcatttggataattttcct |
9220314 |
T |
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| Q |
103 |
tatacaaagcttccattgattattgattggagtgtgggaaaaacttgtaaggaagatgactatgcttgcaagaagaatagtgattgcattgatgtggaca |
202 |
Q |
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| T |
9220313 |
tataagatgcttccattgattcttgattggagtgtgggaaaaacttgtaaggaagatgaatatgcttgcaagaagaatagtgattgcattgatgtggaca |
9220214 |
T |
|
| Q |
203 |
ttgattttggttaccaatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtaatttaattcgtcttcttctc |
297 |
Q |
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| T |
9220213 |
ttgattttggttaccaatgtaaatgcaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtaatttaattcgtcttcttctc |
9220119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 9157963 - 9157674
Alignment:
| Q |
3 |
tgattttcctaattccacggaattttggggatgtagctattcttttgctgttaaagatggatcctataatttttctgtttctcatttggataattttccg |
102 |
Q |
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||||||||||||||||||||| | || ||| ||||| ||||| |||| |||||||||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
9157963 |
tgattttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatgggttttataatttttctatttctcatttggataattttcct |
9157864 |
T |
|
| Q |
103 |
tatacaaagcttccattgattattgattggagtgtgggaa---aaacttgtaagg------------aagatgactatgcttgcaagaagaatagtgatt |
187 |
Q |
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| T |
9157863 |
tatgagaggcttcctatgattcttgactggagtgttggaagtaaatattgtaatgcttcaaagaatgaagatgattatgcttgcaagaaaaatagtgatt |
9157764 |
T |
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| Q |
188 |
gcattgatgtggacattgattttggttaccaatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggta |
277 |
Q |
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| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9157763 |
gtgatgataaggacattgattttggttaccgatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggta |
9157674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 9164080 - 9163780
Alignment:
| Q |
1 |
tttgattttcctaattccacggaattttggggatgtagctattcttttgctgttaaagatggatcctataatttttctgtttctcatttggataattttc |
100 |
Q |
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| T |
9164080 |
tttgattttcctaattccacggattctttagggtgtagttattcatttgttgttaaagatggattttataatttcactgttgatcatttggatatatttc |
9163981 |
T |
|
| Q |
101 |
cgtatacaaagcttccattgattattgattggagtgtgggaa---aaacttgtaagg------------aagatgactatgcttgcaagaagaatagtga |
185 |
Q |
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| |||| | |||||| ||| || ||||||||||||| |||| ||| |||||||| |||||| |||||||||| |||||||||||| |
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| T |
9163980 |
cctataagatgcttcctttggttcttgattggagtgttggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtga |
9163881 |
T |
|
| Q |
186 |
ttgcattgatgtggacattgattttggttaccaatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtaatttaatt |
285 |
Q |
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||| ||||| ||||||| ||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||| || |||||||||||||||||| |
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| T |
9163880 |
ttgtgatgatgaagacattggttttggttatcgatgtaaatgtaaggaaggttatgaaggagacccatatcatccagaaggatgcataggtaatttaatt |
9163781 |
T |
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| Q |
286 |
c |
286 |
Q |
| |
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| T |
9163780 |
c |
9163780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 286
Target Start/End: Original strand, 9114528 - 9114797
Alignment:
| Q |
32 |
gatgtagctattcttttgctgttaaagatggatcctataatttttctgtttctcatttggataattttccgtatacaaagcttccattgattattgattg |
131 |
Q |
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||||||| |||||||||| ||||||| ||||| | |||||||||||||||||||||||||| || ||||| | || ||||||| |||||| ||||||| |
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| T |
9114528 |
gatgtagatattcttttgttgttaaaaatggagcttataatttttctgtttctcatttggacaaatttcctcacacggagcttcctttgattcttgattg |
9114627 |
T |
|
| Q |
132 |
gagtgtgggaa---aaacttgtaagg------------aagatgactatgcttgcaagaagaatagtgattgcattgatgtggacattgattttggttac |
216 |
Q |
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| T |
9114628 |
gagtgttgcaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttac |
9114727 |
T |
|
| Q |
217 |
caatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtaatttaattc |
286 |
Q |
| |
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| ||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
9114728 |
cgatgcaaatgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggtattttaattc |
9114797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 9175754 - 9175627
Alignment:
| Q |
154 |
gaagatgactatgcttgcaagaagaatagtgattgcattgatgtggacattgattttggttaccaatgtaaatgtaaggaaggttatgaaggaaacccgt |
253 |
Q |
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|||||||| |||||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||| | |||||||||||||| |||| |
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| T |
9175754 |
gaagatgattatgcttgcaggaataatagtgattgttatgataaggacattgattttggttaccgatgtaaatgtaagcatggttatgaaggaaatccgt |
9175655 |
T |
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| Q |
254 |
atcatccagatggctgcataggtaattt |
281 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
9175654 |
atcatccagatggctgcacaggtaattt |
9175627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 9202922 - 9202656
Alignment:
| Q |
30 |
gggatgtagctattcttttgctgttaaagatggatcctataatttttctgtttctcatttggataattttccgtatacaaagcttccattgattattgat |
129 |
Q |
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|||||||||| |||| |||| ||||||| |||||| |||||||| ||||||||| ||||||| |||||||| | | |||||||| |||||| |||| |
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| T |
9202922 |
gggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgagaagcttcctttgattcttgac |
9202823 |
T |
|
| Q |
130 |
tggagtgtgggaa--aaac-ttgtaagg------------aagatgactatgcttgcaagaagaatagtgattgcattgatgtggacattgattttggtt |
214 |
Q |
| |
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|||||||| |||| |||| |||||| | |||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
9202822 |
tggagtgttggaagtaaacattgtaatgcttcaaagattgaagatggttatgcttgcaagaataatagtgattgttatgatgaagacattgattttggtt |
9202723 |
T |
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| Q |
215 |
accaatgtaaatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtaattt |
281 |
Q |
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| | ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||| |
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| T |
9202722 |
atcgatgtaaatgtaaggacggttatggaggaaatccgtatcatccagatggctgcacaggtaattt |
9202656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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