View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_14 (Length: 302)
Name: NF11669_low_14
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 37894313 - 37894016
Alignment:
| Q |
1 |
cacatgccgataataattagaaacataaacattctttattcttatacaattattacacatgcagataattcttgtatcaataccgtacttattgacatca |
100 |
Q |
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| T |
37894313 |
cacatgcagataataattagaaacataaacattctttattcttatacaattattacacatgctgataattcttctatcaataccgtacttattgacatca |
37894214 |
T |
|
| Q |
101 |
taacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnntgaattaattacattcttaacatagagaccaaacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37894213 |
taacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaaaaaaatgaattaattacattcttaacatagagaccaaacag |
37894114 |
T |
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| Q |
201 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttctctct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37894113 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctct |
37894016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 37189400 - 37189113
Alignment:
| Q |
13 |
ataattagaaacat-aaacattctttattcttatacaattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattg |
111 |
Q |
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|||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37189400 |
ataattagaaaccttaaacattctttattcgtata--attattacacatgcagataattcttgtatcaataccgtacttattgacatgataacacaattg |
37189303 |
T |
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| Q |
112 |
agttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnn----tgaattaattacattcttaacatagagaccaaacagcaagacc |
207 |
Q |
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| T |
37189302 |
agttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacagcaagacc |
37189204 |
T |
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| Q |
208 |
aaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttctctct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37189203 |
aaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctct |
37189113 |
T |
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