View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_15 (Length: 294)
Name: NF11669_low_15
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 28142922 - 28143197
Alignment:
| Q |
1 |
actggatatgcaattgcaagacaaagaactcaattataatttggatgaagcactttcaaaagatgaatggatccgtgtagaggttaggtgtgatggctcg |
100 |
Q |
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| T |
28142922 |
actggatatgcaattgcaagacaaagaactcaattataatttggatgaagcactttcaaaagatgaatggatccgtgtagaggttaggtgtgatggctcg |
28143021 |
T |
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| Q |
101 |
atgatgaagtcactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatccttacaaactaaattccg |
200 |
Q |
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| T |
28143022 |
atgatgaagtcactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatccttacaaactaaattccg |
28143121 |
T |
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| Q |
201 |
aagttgttcaagcttcttggatttagactctggattggattgagactcataatcatgaatcattccttggtggaaa |
276 |
Q |
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| T |
28143122 |
aagttgttcaagcttcttggatttagactctggattggattgagactcataatcatgaatcattccttggtggaaa |
28143197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 28154915 - 28154989
Alignment:
| Q |
111 |
cactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatcctt |
185 |
Q |
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| T |
28154915 |
cactcgttacagattttggaatccatgtattaaagcagaaaagtagcatggcggatattcaattcaccgatcctt |
28154989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 29662746 - 29662694
Alignment:
| Q |
125 |
tgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcac |
177 |
Q |
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| T |
29662746 |
tgtggaatccatgtattgaaagagaaaagtaacatgaatgatattcgattcac |
29662694 |
T |
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