View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_16 (Length: 276)
Name: NF11669_low_16
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 37571962 - 37572223
Alignment:
| Q |
1 |
taaaacgcataagtcattaagcacttac---actataataagcattagagatagttatcgcttgacagaagcaggtcgagagagcactaagnnnnnnngg |
97 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37571962 |
taaaacgcataagtcattaagcacttactacactataataagcattagagatagttatcgcttgacagaagcaggtcgagagagcactaagcaaaaaagg |
37572061 |
T |
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| Q |
98 |
gttaaacttgaacgaacacgagaaacggtgtcnnnnnnnnnnnnnnnnnnnnnnnnngtaatcaatcagtgaaagaaagtttttgaagaaccatgttcag |
197 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37572062 |
gttaaacttgaacgaacacaagaaacggtgtcgttttgttttgttttgttttgtttggtaatcaatcagtgaaagaaagtttttgaagaaccatgttcag |
37572161 |
T |
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| Q |
198 |
aaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgttccatg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37572162 |
aaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgttccatg |
37572223 |
T |
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