View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_18 (Length: 254)
Name: NF11669_low_18
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_18 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 31186663 - 31186537
Alignment:
| Q |
130 |
gcctcaacgaagctttctttgataacaa--gaaaatggtttccactagcaaaaaccaatacatattcactctgttcctcctccttgcagttgctggtatt |
227 |
Q |
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| T |
31186663 |
gcctcaacgaagctttctttgataacaatagaaaatggtttccactagcaaaaaccaatacatattggctctgttcctcctccttgcagttgctggtatt |
31186564 |
T |
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| Q |
228 |
aacaatgtcatgtcccgaaaactgtac |
254 |
Q |
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| T |
31186563 |
accaatgtcatgtcccgaaaactgtac |
31186537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31186794 - 31186687
Alignment:
| Q |
1 |
taagaaagcaaccatgcagattcagattaatttaaattctatatgatctctatataaactatcaatgctattgccttcaattcataccaatttacatttc |
100 |
Q |
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| T |
31186794 |
taagaaagcaaccatgcagattcagattaatctaaattctatatgatctctatataaactatcaatgctattgccttcaattcataccaatttacatttc |
31186695 |
T |
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| Q |
101 |
tccctcaa |
108 |
Q |
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| T |
31186694 |
tccctcaa |
31186687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 31195307 - 31195185
Alignment:
| Q |
131 |
cctcaacgaagctttctttgataacaagaaaatggtttccactagcaaaaaccaatacatattcactctgttcctcctccttgcagttgctggtattaac |
230 |
Q |
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| T |
31195307 |
cctcaacaaagctttctttgataacaagaaaatggtttccactagccaaaaacaacacatattggttctgttcctcctccttgcacttgctgatattacc |
31195208 |
T |
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| Q |
231 |
aatgtcatgtcccgaaaactgta |
253 |
Q |
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| T |
31195207 |
aatgtcatgtcccgaaaactgta |
31195185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 31195409 - 31195321
Alignment:
| Q |
18 |
agattcagattaatttaaattctatatgatctctatataaactatcaatgctattgccttcaattcataccaatttacatttctccctcaa |
108 |
Q |
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||||||||||||||||| | ||| || |||||||||||||| | |||| | ||||||||| |||||||||||||||| |||||||||||| |
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| T |
31195409 |
agattcagattaatttagagtctgta--atctctatataaaccaccaataccattgccttcgattcataccaatttacttttctccctcaa |
31195321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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