View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_19 (Length: 253)
Name: NF11669_low_19
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55337209 - 55337443
Alignment:
| Q |
1 |
gttttgctttgtgtttagtgttagtgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttatt |
100 |
Q |
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| T |
55337209 |
gttttgatttgtgtttagtgttagtgaggaaaggtttatatatatactat-----tgtgacagggaggatgagtgcaacttgtaatgttatagttttatt |
55337303 |
T |
|
| Q |
101 |
caattttttaagacaa-gagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaata |
199 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337304 |
caattttttagtacaaagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaata |
55337403 |
T |
|
| Q |
200 |
acatgtttttagtattaaaaaatgaagctaatgagttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55337404 |
acatgtttttagtattaaaaaatgaagctaatgagttcat |
55337443 |
T |
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