View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_low_21 (Length: 251)

Name: NF11669_low_21
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_low_21
NF11669_low_21
[»] chr6 (11 HSPs)
chr6 (1-251)||(28142686-28142936)
chr6 (1-112)||(2170590-2170701)
chr6 (2-91)||(2187926-2188015)
chr6 (4-57)||(26805561-26805614)
chr6 (1-98)||(28246416-28246513)
chr6 (4-57)||(27715568-27715621)
chr6 (1-98)||(28239438-28239535)
chr6 (1-71)||(28789402-28789472)
chr6 (4-57)||(27681996-27682049)
chr6 (1-57)||(26887828-26887884)
chr6 (1-85)||(28152281-28152365)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-112)||(12560-12671)
[»] scaffold0038 (2 HSPs)
scaffold0038 (1-98)||(46578-46675)
scaffold0038 (1-98)||(39600-39697)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-98)||(55255-55352)
[»] chr1 (1 HSPs)
chr1 (4-71)||(265379-265446)
[»] scaffold0349 (1 HSPs)
scaffold0349 (4-57)||(16324-16377)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-71)||(10552-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-71)||(1761-1831)
scaffold0277 (1-71)||(10727-10797)
[»] chr2 (1 HSPs)
chr2 (1-57)||(17990204-17990260)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 28142686 - 28142936
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142686 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatcca 28142785  T
Q  101 taaataacaagctccctgacagtcactttctttcgttgagagtcaatggcgttgcatgggctcttgatcatcgatggaacagaacaaataaatatcatcc 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142786 taaataacaagctccctgacagtcactttctttcgttaagagtcaatggcgttgcatgggctcttgatcatcgatggaacagaacaaataaatatcatcc 28142885  T
Q  201 tactttaatcgaggtgaaaccggaccatacttatctactggatatgcaatt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142886 tactttaatcgaggtgaaaccggaccatacttatctactggatatgcaatt 28142936  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 2170701 - 2170590
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatcca 100  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||| |    
T  2170701 attccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaa 2170602  T
Q  101 taaataacaagc 112  Q
    |  |||||||||    
T  2170601 tggataacaagc 2170590  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 2187926 - 2188015
Alignment:
Q  2 ttccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgcta 91  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||  | |||||||||||| ||| ||||| ||||||    
T  2187926 ttccagagtggtttgatcaccaaagcgagggaccatcaatttctttttggtttcgtggcaggttcccttccatagctctcttcgttgcta 2188015  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 26805561 - 26805614
Alignment:
Q  4 ccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    ||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  26805561 ccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt 26805614  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28246416 - 28246513
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatc 98  Q
    |||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||||    
T  28246416 attccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatc 28246513  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 27715621 - 27715568
Alignment:
Q  4 ccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  27715621 ccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 27715568  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28239438 - 28239535
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatc 98  Q
    ||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||||    
T  28239438 attccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatc 28239535  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28789402 - 28789472
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 71  Q
    |||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  28789402 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 28789472  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 27681996 - 27682049
Alignment:
Q  4 ccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    ||||| ||||||||||||||||||| ||||||   |||| ||||||||||||||    
T  27681996 ccagattggtttgagcaccaaagcaggggacccataatttctttctggtttcgt 27682049  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26887828 - 26887884
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    |||||||| ||||||||||||||||||| |||||   || || ||||||||||||||    
T  26887828 attccagattggtttgagcaccaaagcaggggacacacactttctttctggtttcgt 26887884  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28152281 - 28152365
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttct 85  Q
    |||||||||| |||| ||||||| |||| | ||| | ||||| |||||||||||| | | ||| |||||||||| ||| ||||||    
T  28152281 attccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttct 28152365  T

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Target: scaffold0286 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12560 - 12671
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatcca 100  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||| |    
T  12560 attccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaa 12659  T
Q  101 taaataacaagc 112  Q
    |  |||||||||    
T  12660 tggataacaagc 12671  T

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Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 46578 - 46675
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatc 98  Q
    |||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||||    
T  46578 attccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatc 46675  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39600 - 39697
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatc 98  Q
    ||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||||    
T  39600 attccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaatc 39697  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 55352 - 55255
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatc 98  Q
    ||||||||||||||||||||||||| || |||||   | ||| |||| ||||||||| | ||| ||||||||| |||| |||| ||| ||||||||||    
T  55352 attccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctttttttctactaaatc 55255  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 265446 - 265379
Alignment:
Q  4 ccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 71  Q
    ||||| ||||||||||||||||||||||||    ||||| |||||||||||||| ||||| |||||||    
T  265446 ccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaaaaagatcccttc 265379  T

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Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 16324 - 16377
Alignment:
Q  4 ccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  16324 ccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 16377  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10552 - 10622
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 71  Q
    |||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10552 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10622  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1831 - 1761
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 71  Q
    |||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  1831 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 1761  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10797 - 10727
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 71  Q
    |||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10797 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10727  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17990260 - 17990204
Alignment:
Q  1 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 57  Q
    |||||||| ||||||||||||||||||| ||| |   ||||| ||||||||||||||    
T  17990260 attccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttcgt 17990204  T

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