View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_25 (Length: 244)
Name: NF11669_low_25
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_25 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 31186308 - 31186534
Alignment:
| Q |
18 |
caatcttcttgtaaccattacgggaagccttaaattcatcaagagtcaaatcagctaggtgattaacacttagcttgtaaggtttattatcagctgcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31186308 |
caatcttcttgtaaccattacgggaagccttaaattcatcaagagtcaaatcagctaggtgattaacacttagcttgtaaggttgattatcagctgcatt |
31186407 |
T |
|
| Q |
118 |
gaatgattcaatgaactcaacattgtctttgaatatcatgaaacgtttttctttctcaatagcatcttcgtacactttgccatgttctgccatccattgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31186408 |
gaatgattcaatgaactcaacattgtctttgaatatcatgaaacgtttttctttctcaatagcatcttcgtacactttgccatgttctgtcatccattgt |
31186507 |
T |
|
| Q |
218 |
tcgtgtctttcttgcaaagacagtgac |
244 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
31186508 |
tcgtgtctttcttgtaaagacagtgac |
31186534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 31194955 - 31195174
Alignment:
| Q |
18 |
caatcttcttgtaaccattacgggaagccttaaattcatcaagagtcaaatcagctaggtgattaacacttagcttgtaaggtttattatcagctgcatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
31194955 |
caatcttcttgtaaccattacgggaagccttaaattcatcaagagtcaaatcagctaggtgattaacacttagcttgtaaggtttgttgtcagctgcatt |
31195054 |
T |
|
| Q |
118 |
gaatgattcaatgaactcaacattgtctttgaatatcatgaaacgtttttctttctcaatagcatcttcgtacactttgccatgttctgccatccattgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||| ||||| |||||| ||| |
|
|
| T |
31195055 |
gaatgattcaatgaactcaacattgtctttgaatatcatgaaacgtttttccttctcaatagcatctttatacaattttccatattctgacatccactgc |
31195154 |
T |
|
| Q |
218 |
tcgtgtctttcttgcaaaga |
237 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
31195155 |
tcgtgtctttcttgtaaaga |
31195174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University