View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_27 (Length: 242)
Name: NF11669_low_27
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_27 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42394467 - 42394688
Alignment:
| Q |
1 |
tttccggcggcagggggatcacggttggcgaaaacggtgtcatagtcttttagaacttcacgagctgtggaaggtgaagttaacacgatgccaagtttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42394467 |
tttccggcggcagggggatcacggttggcgaaaatggtgtcgtagtcttttagaacttcacgagccatggaaggtgaagttaacacgatgccaagtttgc |
42394566 |
T |
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| Q |
101 |
taccaagcctgagcttgaaaattgggccgtgggcttgggctaggccggtgaagtaagtgtgaagctctggctcgagtgatagaaggttaccgataatagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394567 |
taccaagcctgagcttgaaaattgggccgtgggcttgggctaggccggtgaagtaagtgtgaagctctggctcgagtgatagaaggttaccgataatagg |
42394666 |
T |
|
| Q |
201 |
aaggcccggcgggcctggtggt |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
42394667 |
aaggcccgacgggcctggtggt |
42394688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 42378555 - 42378773
Alignment:
| Q |
4 |
ccggcggcagggggatcacggttggcgaaaacggtgtcatagtcttttagaacttcacgagctgtggaaggtgaagttaacacgatgccaagtttgctac |
103 |
Q |
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|||||||||||| ||||||||||||||||| ||||| | |||||||||||||| || ||||||||||||||||| || || || || |||||||| | |
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| T |
42378555 |
ccggcggcagggacgtcacggttggcgaaaactgtgtcgtggtcttttagaacttggcgtgctgtggaaggtgaagtcaaaacaataccgagtttgcttc |
42378654 |
T |
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| Q |
104 |
caagcctgagcttgaaaattgggccgtgggcttgggctaggccggtgaagtaagtgtgaagctctggctcgagtgatagaaggttaccgataataggaag |
203 |
Q |
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| T |
42378655 |
cgagccagagcttgtaaattgggccgtgggcttgggctagtccggcgaagtaagtgtgaagttctgggtcgagtgatagaaggtttccgaagatgggaaa |
42378754 |
T |
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| Q |
204 |
gcccggcgggcctggtggt |
222 |
Q |
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|||||| |||||||||||| |
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| T |
42378755 |
gcccggtgggcctggtggt |
42378773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 42390193 - 42390309
Alignment:
| Q |
96 |
tttgctaccaagcctgagcttgaaaattgggccgtgggcttgggctaggccggtgaagtaagtgtgaagctctggctcgagtgatagaaggttaccgata |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| || || || ||||| ||||| |||||||||| |
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| T |
42390193 |
tttgctaccaagcctgagcttgaaaattgggccgtgggcttgggctagccaggcgaagtaagtgtggagttcgggatcgagagataggaggttaccgaag |
42390292 |
T |
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| Q |
196 |
ataggaaggcccggcgg |
212 |
Q |
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||||||||||||||||| |
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| T |
42390293 |
ataggaaggcccggcgg |
42390309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 357 - 568
Alignment:
| Q |
1 |
tttccggcggcagggggatcacggttggcgaaaacggtgtcatagtcttttagaacttcacgagctgtggaaggtgaagttaacacgatgccaagtttgc |
100 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
357 |
tttccggcagcagggggatcacggttggtgaaaacggtgtcgtagtctttaagaacttcacgagctgtggaaggtgaagttatgacgataccgagtttgc |
456 |
T |
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| Q |
101 |
taccaagcctgagcttgaaaattgggccgtgggcttgggctaggccggtgaagtaagtgtgaagctctggctcgagtgatagaaggttaccgataatagg |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || || || ||||| ||||| |||||||||| ||||| |
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| T |
457 |
taccaagcctgagcttgaaaattgggccgtgggtttgggctagcccgacgaagtaagtgtggagttcaggatcgagagataggaggttaccgaagatagg |
556 |
T |
|
| Q |
201 |
aaggcccggcgg |
212 |
Q |
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|||||||||||| |
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| T |
557 |
aaggcccggcgg |
568 |
T |
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