View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_3 (Length: 454)
Name: NF11669_low_3
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 30861767 - 30861324
Alignment:
| Q |
17 |
caaatgacggttacaaacattgaaaaactcccaatgcagccaccagactagaacaggaaaacaaacaagcttcaaaacataataacttaatcataattct |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30861767 |
caaatgacagttacaaacattgaaaaactcccaatgcagccaccagactagaacaggaaaacaaacaagcttcaaaacataataacttaatcataattct |
30861668 |
T |
|
| Q |
117 |
ctcaattcccaaacaattcatgttggagaaggtcataatcacttacgggatcatcatttcctccattttcattgtcttctccattatctccatcttcact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30861667 |
ctcaattcccaaacaattcatgttggagaaggtcataatcacttaagggatcatcatttcctccattttcattgtcttctccattatctccatcttcact |
30861568 |
T |
|
| Q |
217 |
ttcatcttc------------gcctaaatattcctcatcctcttcaatttaatgttgattcacttatacgaagtctccatccaaaattctagtgccacca |
304 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30861567 |
ttcatcttccaattcatcttcgcctaaatattcctcatcctcttcaatttaatgttgattcacttatacgaagtctccatccaaaattttagtgccacca |
30861468 |
T |
|
| Q |
305 |
tcttttgcactttcattcataacccaatcatcatcggaaccaaggccatcaaacttcatttcaagtgttcttctccctttctttttcttggccaatcttg |
404 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30861467 |
tcttctgcactttcattcataacccaatcatcatcggaaccaaggccatcaaacttcatttcaggtgttcttctccctttctttttcttggccaatcttg |
30861368 |
T |
|
| Q |
405 |
aattagcggtgacaaatacaacctcattcatcggcctttgcttc |
448 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
30861367 |
aattagcggtgacaaatacaacgtcattcatcggcttttgcttc |
30861324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 30860484 - 30860580
Alignment:
| Q |
89 |
caaaacataataacttaatcataattctctcaattcccaaacaattcatgttggagaaggtcataatcacttacgggatcatcatttcctccatttt |
185 |
Q |
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|||||||| | |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||| | ||||||||||||||||||||||| |
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| T |
30860484 |
caaaacattaaaacttaattataattctctcaattcccaaacacttcatgttggagtaggtcataattactcaggggatcatcatttcctccatttt |
30860580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 435
Target Start/End: Original strand, 30860672 - 30860872
Alignment:
| Q |
236 |
tcctcatcctcttcaatttaatgttgattcacttatacgaagtctccatccaaaattctagtgccaccatcttttgcactttcattcataacccaatcat |
335 |
Q |
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||||||||||| ||||||| || ||||||||||| | ||||| | ||||||||| ||||||| ||||| | || ||||| |||||| ||||| || |
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| T |
30860672 |
tcctcatcctcctcaatttgatattgattcacttcagcaaagtcctcgtccaaaatttcagtgccaatatcttctacattttcactcataatccaattat |
30860771 |
T |
|
| Q |
336 |
catcggaaccaaggc-catcaaacttcatttcaagtgttcttctccctttctttttcttggccaatcttgaattagcggtgacaaatacaacctcattca |
434 |
Q |
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|||| |||||||| ||||||||| |||||||||||||| ||| ||| | ||||||| |||||||| |||||||| ||| ||||| ||| ||||||| |
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| T |
30860772 |
catcaaaaccaagggtcatcaaactccatttcaagtgttcctcttcctaacgttttcttagccaatctcgaattagccatgaaaaatataacgtcattca |
30860871 |
T |
|
| Q |
435 |
t |
435 |
Q |
| |
|
| |
|
|
| T |
30860872 |
t |
30860872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 31075348 - 31075224
Alignment:
| Q |
100 |
aacttaatcataattctctcaattcccaaacaattcatgttggagaaggtcataatcacttacgggatcatcatttcctccattttcattgtcttctcca |
199 |
Q |
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|
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| | ||||| ||||||||||||| || ||| ||||||||| |
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| T |
31075348 |
aacttaatcataattctcttaattcccaaataattcatgttgaagaaggtcataatcacggaagggataatcatttcctccaactttattatcttctcca |
31075249 |
T |
|
| Q |
200 |
ttatctccatcttcactttcatctt |
224 |
Q |
| |
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|||||| ||||||| ||||||||| |
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| T |
31075248 |
ttatctagatcttcattttcatctt |
31075224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 426
Target Start/End: Complemental strand, 31075058 - 31074951
Alignment:
| Q |
319 |
attcataacccaatcatcatcggaaccaaggccatcaaacttcatttcaagtgttcttctccctttctttt-tcttggccaatcttgaattagcggtgac |
417 |
Q |
| |
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|||||||| ||||||||||| ||||||||| |||||||| |||| | | ||||||| |||||||||||| ||| |||||||| ||||||| ||| |
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| T |
31075058 |
attcataatccaatcatcattagaaccaaggtcatcaaac-tcatcttaggtgttctaatccctttcttttatctaaaccaatcttaaattagccacgac |
31074960 |
T |
|
| Q |
418 |
aaatacaac |
426 |
Q |
| |
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||||||||| |
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| T |
31074959 |
aaatacaac |
31074951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 15556767 - 15556662
Alignment:
| Q |
120 |
aattcccaaacaattcatgttggagaaggtcataat---cacttacgggatcatcatttcctccattttcattgtcttctccattatctccatcttcact |
216 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||| ||| | || |||||||||||||| |||||| ||||||||||||||| |||||||| | |
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| T |
15556767 |
aatttccaaacaattcatgttgaaggaggtcataataatcacccaatgggtcatcatttcctcc---ttcattatcttctccattatcttcatcttcatt |
15556671 |
T |
|
| Q |
217 |
ttcatcttc |
225 |
Q |
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||||||||| |
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| T |
15556670 |
ttcatcttc |
15556662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 38965871 - 38965789
Alignment:
| Q |
120 |
aattcccaaacaattcatgttggagaaggtcataatcacttacgggatcatcatttcctccattttcattgtcttctccattatct |
205 |
Q |
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|||| ||||||||||||||||| || ||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| |
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| T |
38965871 |
aatttccaaacaattcatgttgaaggaggtcataatcacccaatgggtcatcatttcctcc---ttcattatcttctccattatct |
38965789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 13956733 - 13956815
Alignment:
| Q |
120 |
aattcccaaacaattcatgttggagaaggtcataatcacttacgggatcatcatttcctccattttcattgtcttctccattatct |
205 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| |
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| T |
13956733 |
aatttccaaacaattcatgttgaaggaggtcataatcacccaatgggtcatcatttcctcc---ttcattatcttctccattatct |
13956815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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