View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_34 (Length: 220)
Name: NF11669_low_34
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 449395 - 449186
Alignment:
| Q |
1 |
atgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatc |
100 |
Q |
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| T |
449395 |
atgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatc |
449296 |
T |
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| Q |
101 |
tacctccatggatgaaattttgcacctgttcatatgaaa----gttcatggaaggcatatggaaaataaaaatttgttttagttgagtttgaatgaattg |
196 |
Q |
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| T |
449295 |
tacctccatggatggaattttgcacctgttcatatgaaagtacgttcatggtaggcatatggaaaataaatatttgttttagttgagtttgaatgaatta |
449196 |
T |
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| Q |
197 |
ttgttgtttc |
206 |
Q |
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|||||||||| |
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| T |
449195 |
ttgttgtttc |
449186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 9687525 - 9687636
Alignment:
| Q |
3 |
gtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatcta |
102 |
Q |
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| T |
9687525 |
gtggaacagacggaacgaaagcgaagaagatagagttcactgttgtcgagtttttgtgatattagttgcagaagttctctcggaagctgagaccaatctg |
9687624 |
T |
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| Q |
103 |
cctccatggatg |
114 |
Q |
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| T |
9687625 |
cttccatggatg |
9687636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 9330728 - 9330779
Alignment:
| Q |
50 |
gagtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatct |
101 |
Q |
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| T |
9330728 |
gagtttttgtgaaattagttgaagaagttctgaaggaaggtgagaccaatct |
9330779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 9337403 - 9337466
Alignment:
| Q |
51 |
agtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatctacctccatggatg |
114 |
Q |
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| T |
9337403 |
agtttttgtgaaattagttgaagaagttctgaaggaaggtgagaccaatctgcagccatggatg |
9337466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9710463 - 9710535
Alignment:
| Q |
3 |
gtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaa |
75 |
Q |
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| T |
9710463 |
gtggaacatacggaacgcaagcgaatgaggtagatctcagtgttgttcagtttgtgggatatgagttgcagaa |
9710535 |
T |
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