View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_35 (Length: 220)
Name: NF11669_low_35
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 45628164 - 45627969
Alignment:
| Q |
18 |
cataataataccaacattcacatatctccattatttcaattgtcatgtatctgaatgtacaacaaaagcataatttct--------acacattatttatt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |
|
|
| T |
45628164 |
cataataataccagcattcacatatctccattatttcaattgtcatgtatctgaatgtacaacaaaagcataatttctcagtacagacacattttttgtt |
45628065 |
T |
|
| Q |
110 |
tcacatttatactcaaattctcaattcttgtcattgaggcttactcaccagcttgtgcttgagcttaatttttctgtccccttttgaacctttgct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45628064 |
tcacatttatactcaaattctcaattcttgtcattgaggcttactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctttgct |
45627969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 30784317 - 30784124
Alignment:
| Q |
18 |
cataataataccaacattcacatatctccattatttcaattgtcatgtatctgaatgtacaacaaaagcataatttct--------acacattatttatt |
109 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
30784317 |
cataataatatcagcattcacatatctgcattatttcaattgtcatgtatctgaatctacaacaaaagcagaatttctgagtacagacacattatttatt |
30784218 |
T |
|
| Q |
110 |
tcacatttatactcaaattctcaattcttgtcattgaggcttactcaccagcttgtgcttgagcttaatttttctgtccccttttgaacctttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30784217 |
tcacatttatactcaaattctcaattcttgtcattgaggcatactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctttg |
30784124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 36322048 - 36321882
Alignment:
| Q |
46 |
cattatttcaattgtcatgtatctgaatgtacaacaaaagcataatttct--------acacattatttatttcacatttatactcaaattctcaattct |
137 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36322048 |
cattattttaattgtcatgtatctaaatgtacaacaaaagcagaatttctgagtacagacacattatttatttcacatttatactcaaattctcaattct |
36321949 |
T |
|
| Q |
138 |
tgtcattgaggcttactcaccagcttgtgcttgagcttaatttttctgtccccttttgaacctttgc |
204 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36321948 |
tgtcattgatgcttattcaccaggttgtgcttgagcttgatttttctgtccccttttgaacctttgc |
36321882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 36306674 - 36306529
Alignment:
| Q |
33 |
attcacatatctccattatttcaattgtc-atgtatctgaatgtacaacaaaagcataatttct--------acacattatttatttcacatttatactc |
123 |
Q |
| |
|
|||||||| ||| ||| |||||| |||| || ||||| ||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
36306674 |
attcacatgtctgtattttttcaactgtccatatatctaaatgtacaacaaaagcaaaatttctgagtacaaacactttatttacttcacatttatactc |
36306575 |
T |
|
| Q |
124 |
aaattctcaattcttgtcattgaggcttactcaccagcttgtgctt |
169 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
36306574 |
aaattctcaattcttgtcattgaggcttattcaccaggttgtgctt |
36306529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University