View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_low_37 (Length: 211)

Name: NF11669_low_37
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_low_37
NF11669_low_37
[»] chr1 (6 HSPs)
chr1 (10-192)||(9163956-9164138)
chr1 (10-192)||(9220291-9220473)
chr1 (41-192)||(9157872-9158023)
chr1 (54-192)||(9175842-9175980)
chr1 (34-192)||(9114439-9114597)
chr1 (54-192)||(9202871-9203009)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 9163956 - 9164138
Alignment:
Q  10 agaagcaaaggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaag 109  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163956 agaaccaaaggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaag 9164055  T
Q  110 aatccgtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164056 aatccgtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 9164138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 9220291 - 9220473
Alignment:
Q  10 agaagcaaaggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaag 109  Q
    |||| ||| ||||||| |||||| |||||  |||||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  9220291 agaatcaatggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatgaataactacaccccaaag 9220390  T
Q  110 aatccgtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9220391 aatccgtggaattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaata 9220473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 9157872 - 9158023
Alignment:
Q  41 tatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttg 140  Q
    |||||||||||  || ||  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  9157872 tatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaagcttc 9157971  T
Q  141 tacacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9157972 tatacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 9158023  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 9175842 - 9175980
Alignment:
Q  54 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 153  Q
    ||||||||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||||||||| | ||||||||    
T  9175842 aacagtgaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagcttgtatagttatattc 9175941  T
Q  154 ctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9175942 ctcatcataggtggaatatcaacttgacaacaaccaata 9175980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 9114597 - 9114439
Alignment:
Q  34 ggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaa 133  Q
    |||||| | |||||||||  |||||  |||||||||  ||||| |||||||||||| ||||| ||||| |  ||||| ||  ||||||||  |||| |||    
T  9114597 ggaaatttgtccaaatgagaaacagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagcaa 9114498  T
Q  134 aagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    |||||| || | |||||||||||||| |||||||||||||||||| |||||||||||||    
T  9114497 aagcttctatagttatattcctcatcttaggtggaatatcaacttcacaacaaccaata 9114439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 9202871 - 9203009
Alignment:
Q  54 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 153  Q
    ||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||| ||||| | ||||||||    
T  9202871 aacagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattc 9202970  T
Q  154 ctcatcataggtggaatatcaacttgacaacaaccaata 192  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9202971 ctcatcataggtggaatatcaacttgacaacaaccaata 9203009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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