View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_low_38 (Length: 211)

Name: NF11669_low_38
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_low_38
NF11669_low_38
[»] chr2 (3 HSPs)
chr2 (1-211)||(16232244-16232457)
chr2 (1-207)||(34690907-34691114)
chr2 (1-207)||(34713319-34713526)
[»] chr8 (4 HSPs)
chr8 (96-176)||(4297574-4297654)
chr8 (93-203)||(4619754-4619861)
chr8 (1-75)||(4787458-4787535)
chr8 (149-202)||(1846555-1846608)
[»] chr1 (19 HSPs)
chr1 (1-202)||(45983704-45983916)
chr1 (100-205)||(38137971-38138077)
chr1 (1-75)||(43045204-43045281)
chr1 (1-75)||(43045657-43045734)
chr1 (1-75)||(43066673-43066750)
chr1 (1-75)||(43084085-43084162)
chr1 (102-181)||(40034809-40034886)
chr1 (96-211)||(43045057-43045170)
chr1 (147-211)||(3300791-3300855)
chr1 (1-75)||(40034690-40034767)
chr1 (1-75)||(45993490-45993567)
chr1 (149-203)||(7888848-7888902)
chr1 (5-75)||(3300941-3301013)
chr1 (149-202)||(7891113-7891166)
chr1 (2-85)||(38137859-38137945)
chr1 (94-130)||(43066782-43066818)
chr1 (147-211)||(43066870-43066934)
chr1 (147-211)||(43083901-43083965)
chr1 (94-130)||(43084017-43084053)
[»] chr4 (1 HSPs)
chr4 (1-64)||(4231691-4231754)
[»] chr5 (1 HSPs)
chr5 (1-87)||(16349337-16349426)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16232457 - 16232244
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgc---aacaaggtattgacattttcagcatctgattat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  16232457 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgctgcaacaaggtattgacattttcagcatctgattat 16232358  T
Q  98 tatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaaggacagatatgaagtaat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16232357 tatttttataattcatttatataagtaataattattaacatctatcttcacagatgaatgccactacaccgaaatactccaaggacagatatgaagtaat 16232258  T
Q  198 tgtgaagggagttt 211  Q
    ||||||||||||||    
T  16232257 tgtgaagggagttt 16232244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 34691114 - 34690907
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgc---aacaaggtattgacatttt-cagcatctgatta 96  Q
    |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||   ||||||||||| | ||||| |||||| ||||||    
T  34691114 tggtcagacctgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatatttttcagcatttgatta 34691015  T
Q  97 ttatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaaggacagatatgaagtaa 196  Q
    ||   ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || |||||| |||    
T  34691014 tt---tttataattcatttatataagtattaattattaacatctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaa 34690918  T
Q  197 ttgtgaaggga 207  Q
    |||||||||||    
T  34690917 ttgtgaaggga 34690907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 34713526 - 34713319
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgc---aacaaggtattgacatttt-cagcatctgatta 96  Q
    |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||   ||||||||||| | ||||| |||||| ||||||    
T  34713526 tggtcagacctgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatatttttcagcatttgatta 34713427  T
Q  97 ttatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaaggacagatatgaagtaa 196  Q
    ||   ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || |||||| |||    
T  34713426 tt---tttataattcatttatataagtattaattattaacatctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaa 34713330  T
Q  197 ttgtgaaggga 207  Q
    |||||||||||    
T  34713329 ttgtgaaggga 34713319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 4297654 - 4297574
Alignment:
Q  96 attatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactc 176  Q
    |||||||||||||||||||| ||||| || ||||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  4297654 attatttttataattcatttgtataaatactaattatcatcatctatcttcacagatggatgccactacacccaaatactc 4297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 4619861 - 4619754
Alignment:
Q  93 attattatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaaggacagatatgaa 192  Q
    |||||||||||||| |||||||||||||| || ||||| |   |||||||||| | |||||||||||||| |||| |||||||| ||| | || ||||||    
T  4619861 attattatttttattattcatttatataattactaatttt---catctatcttgatagatggatgccactgcacccaaatactccaagtataggtatgaa 4619765  T
Q  193 gtaattgtgaa 203  Q
    | | |||||||    
T  4619764 gaatttgtgaa 4619754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4787458 - 4787535
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    ||||||||||   ||||||||||| ||||| | |||| ||||||||| |||||||||||||   ||||||||||||||    
T  4787458 tggtcagacccttgaacatgctcttcttgccttcactgttggtgtgaagcaaatgatctgctgctgcaacaaggtatt 4787535  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 1846608 - 1846555
Alignment:
Q  149 agatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtga 202  Q
    ||||||||||||||||||| |||||||| ||||| || ||||||  ||||||||    
T  1846608 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 1846555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 45983704 - 45983916
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgat---ctgctgcaacaaggtattgacattttcagcatct----ga 93  Q
    |||||||||| | ||||||||||| ||||| | ||||||||||||||  ||||||||   |||||||||||||||||| | |||||| ||  ||    ||    
T  45983704 tggtcagacccgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatttatattttccgcccctttaaga 45983803  T
Q  94 tt-------attatttttataattcatttatataagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaaggacaga 186  Q
    ||       ||||||||||||||||||||||||||||| |||||||   |||||| |   ||||||||||||||||||||| |||||||||| ||| ||     
T  45983804 ttgtatttgattatttttataattcatttatataagtactaattat---catctaccccgacagatggatgccactacacctaaatactctagggatagg 45983900  T
Q  187 tatgaagtaattgtga 202  Q
    |||| || ||||||||    
T  45983901 tatgtagaaattgtga 45983916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 38137971 - 38138077
Alignment:
Q  100 tttttataattcatttatataagtaataattattaac-atctatcttcacagatggatgccactacaccgaaatactctaaggacagatatgaagtaatt 198  Q
    |||||||| ||||||| |||||||| ||||| |   | |||||| || ||||||||||||||||||||| |||||||| ||||| || ||||||| ||||    
T  38137971 tttttatatttcatttgtataagtactaattgtgtgctatctatattgacagatggatgccactacacccaaatactccaaggataggtatgaagaaatt 38138070  T
Q  199 gtgaagg 205  Q
    |||||||    
T  38138071 gtgaagg 38138077  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43045281 - 43045204
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    |||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43045281 tggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43045204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43045734 - 43045657
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    |||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43045734 tggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43045657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43066673 - 43066750
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    |||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43066673 tggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43066750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43084162 - 43084085
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    |||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43084162 tggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43084085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 40034809 - 40034886
Alignment:
Q  102 tttataattcatttatat-aagtaataattattaacatctatcttcacagatggatgccactacaccgaaatactctaagg 181  Q
    |||||| ||||||||||| ||||| |||||||   |||||||||| |||||||||||| |||||||| |||||||||||||    
T  40034809 tttatagttcatttatattaagtactaattat---catctatcttgacagatggatgcaactacacccaaatactctaagg 40034886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 43045170 - 43045057
Alignment:
Q  96 attatttttataattcatttatataagtaataattattaacatctatcttca-cagatggatgccactacaccgaaatactctaaggacagatatgaagt 194  Q
    |||||||||||||||||||||| |||||| |||||     |||||||||| | ||||||||||| |||||||| || ||||| ||||  |||||||| |     
T  43045170 attatttttataattcatttatttaagtactaatttg---catctatcttgaacagatggatgctactacacccaagtactccaagggtagatatgatga 43045074  T
Q  195 aattgtgaagggagttt 211  Q
    ||||||||||| |||||    
T  43045073 aattgtgaaggaagttt 43045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 3300855 - 3300791
Alignment:
Q  147 acagatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtgaagggagttt 211  Q
    ||||||||||||||||||||| || ||||| ||||  || ||||||| ||||||||||| |||||    
T  3300855 acagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagttt 3300791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40034690 - 40034767
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 75  Q
    ||||||||||   ||||||||||| ||||| || |||||||||||||  ||||||||||||   ||||||||||||||    
T  40034690 tggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatt 40034767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45993490 - 45993567
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatc---tgctgcaacaaggtatt 75  Q
    |||||||||  | ||||||||||| ||||| | ||||||||||||||  |||||||||   |||||||||||||||||    
T  45993490 tggtcagactcgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgttgctgcaacaaggtatt 45993567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 7888848 - 7888902
Alignment:
Q  149 agatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtgaa 203  Q
    ||||||||||||||||||| | ||||||  ||||||| ||||||| |||||||||    
T  7888848 agatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaa 7888902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3301013 - 3300941
Alignment:
Q  5 cagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatga--tctgctgcaacaaggtatt 75  Q
    |||||| | ||||| ||||| ||||| | |||||||||||||| ||||||||  | |||||||||||||||||    
T  3301013 cagacccgtgaacacgctcttcttgctttcactcttggtgtgaagcaaatgatttttgctgcaacaaggtatt 3300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 7891113 - 7891166
Alignment:
Q  149 agatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtga 202  Q
    ||||||||||||||||||| |||||||| ||||| || ||||||  ||||||||    
T  7891113 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 7891166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 38137859 - 38137945
Alignment:
Q  2 ggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgat---ctgctgcaacaaggtattgacattttca 85  Q
    ||||||||||  ||||||||||| ||||| | |  |||||||||| | ||||||||   |||||||||||||||||| | |||||||    
T  38137859 ggtcagacctctgaacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatattttca 38137945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 43066782 - 43066818
Alignment:
Q  94 ttattatttttataattcatttatataagtaataatt 130  Q
    |||||||||||||||||||||||| |||||| |||||    
T  43066782 ttattatttttataattcatttatttaagtactaatt 43066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 43066870 - 43066934
Alignment:
Q  147 acagatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtgaagggagttt 211  Q
    |||||||||||| |||||||| || ||||| ||||  |||||||| | ||||||||||| |||||    
T  43066870 acagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagttt 43066934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 43083965 - 43083901
Alignment:
Q  147 acagatggatgccactacaccgaaatactctaaggacagatatgaagtaattgtgaagggagttt 211  Q
    |||||||||||| |||||||| || ||||| ||||  |||||||| | ||||||||||| |||||    
T  43083965 acagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagttt 43083901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 43084053 - 43084017
Alignment:
Q  94 ttattatttttataattcatttatataagtaataatt 130  Q
    |||||||||||||||||||||||| |||||| |||||    
T  43084053 ttattatttttataattcatttatttaagtactaatt 43084017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4231754 - 4231691
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgc 64  Q
    |||||||||  | ||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  4231754 tggtcagactcgtgaacatgctctccttgctttcactcttggtgtgaggcaaatgatctgctgc 4231691  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16349426 - 16349337
Alignment:
Q  1 tggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgacattttcagc 87  Q
    |||||||| | | ||||||||||| | ||| ||| |||||||||| | ||||||||||||   ||||||||||||||| | |||||||||    
T  16349426 tggtcagatccgtgaacatgctctccatgcttactctcttggtgtcaagcaaatgatctgctgctgcaacaaggtattcatattttcagc 16349337  T

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