View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11669_low_4 (Length: 447)

Name: NF11669_low_4
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11669_low_4
NF11669_low_4
[»] chr4 (16 HSPs)
chr4 (18-442)||(6737864-6738283)
chr4 (18-238)||(6541762-6541982)
chr4 (241-442)||(6542735-6542919)
chr4 (18-125)||(6503854-6503961)
chr4 (18-103)||(6811523-6811608)
chr4 (18-103)||(6792068-6792153)
chr4 (18-125)||(6502603-6502710)
chr4 (18-103)||(6593465-6593550)
chr4 (22-103)||(6832044-6832125)
chr4 (23-122)||(6748533-6748632)
chr4 (18-103)||(6627114-6627199)
chr4 (18-122)||(6550727-6550831)
chr4 (18-100)||(6522912-6522994)
chr4 (18-103)||(6646747-6646832)
chr4 (229-377)||(6748264-6748414)
chr4 (26-103)||(6769229-6769306)
[»] scaffold0729 (1 HSPs)
scaffold0729 (18-103)||(6476-6561)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 6738283 - 6737864
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6738283 atggttgatttaccaatccctgtcatcccccatatccctagcaggagagaagattttgattgtttcaatagttgaatcacatcttgggcacgagaatgta 6738184  T
Q  118 tgctctctatatggaacgaggctcttttcttgcttacaataagagtagcacatttaactacctgtgttatatgttcacctccgttcctgtataatagaga 217  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||||| | |||||| |||| ||| | ||||||||||||||||||    
T  6738183 tgctctccatatggaatgaggctcttttcttgcttatcataagagtagcacatttaactacatttgttatctgtttacc-ctgttcctgtataatagaga 6738085  T
Q  218 aacaagagaccattatatgtataacaattctccaacatgtacataagttaaaataatatatttgctaaactcataatagtcaaacgaatcaaaacattta 317  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||| |||| | || ||||||||||||||||||||||||| |||||||||||||||    
T  6738084 aacaagagacgattatatgtataacaattctccaaaatgtgcataagtgaaaacactaaatttgctaaactcataatagtcaaatgaatcaaaacattta 6737985  T
Q  318 gtattaaaaatgccataaagatttagtaatctaatttcaaatcaagcaagtttcattactcatttggtccatatcgtaaaaaagctaatgcagcatattt 417  Q
    ||||||||||||| ||||||||  ||| || |||||||||||||||||||||| |||||   ||  ||||  |||||||| ||||| | |||||||||||    
T  6737984 gtattaaaaatgcaataaagatggagttatataatttcaaatcaagcaagttt-attac---ttacgtccgcatcgtaaataagctcacgcagcatattt 6737889  T
Q  418 ggaagcttcattgctgatctctgct 442  Q
    |||||||||||  ||||| ||||||    
T  6737888 ggaagcttcatcactgatttctgct 6737864  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6541762 - 6541982
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 117  Q
    ||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6541762 atggttgatttgccaatccctgtcatcccccatatccctactaaaagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 6541861  T
Q  118 tgctctctatatggaacgaggctcttttcttgcttacaataagagtagcacatttaactacctgtgttatatgttcacctccgttcctgtataatagaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  6541862 tgctctctatatggaacgaggctcttttcttgcttacaataagagtagcacatttaactacatgtgttatatgttcacctctgttcctgtatagtagaga 6541961  T
Q  218 aacaagagaccattatatgta 238  Q
    |||||||||| ||||||||||    
T  6541962 aacaagagacaattatatgta 6541982  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 241 - 442
Target Start/End: Original strand, 6542735 - 6542919
Alignment:
Q  241 acaattctccaacatgtacataagttaaaataatatatttgctaaactcataatagtcaaacgaatcaaaacatttagtattaaaaatgccataaagatt 340  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6542735 acaattctccaacatgtacataagtgaaaatacta-atttgctaaactcataatagtcacatgaatcaaaacatttagtattaaaaatgccataaagatt 6542833  T
Q  341 tagtaatctaatttcaaatcaagcaagtttcattactcatttggtccatatcgtaaaaaagctaatgcagcatatttggaagcttcattgctgatctctg 440  Q
    |||||||||||                |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6542834 tagtaatctaa----------------tttcattactgatttggtccatatcgtaaaaaagctaatgcagcatatttggaagcttcattgctgatttctg 6542917  T

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Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 6503854 - 6503961
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 117  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  6503854 atggttgatttaccaatccctgtcatcccccatatccccagcaggagaggagattttgattgtttcaatagttgaatcacatcttgtgcacgagaatgta 6503953  T
Q  118 tgctctct 125  Q
    ||||||||    
T  6503954 tgctctct 6503961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6811608 - 6811523
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6811608 atggctgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaattgttgaatcacatcttg 6811523  T

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Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6792153 - 6792068
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  6792153 atggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgatcgtttcaatagttgaatcacatcttg 6792068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 6502603 - 6502710
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 117  Q
    ||||||||||||| |||||||| ||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||| ||| |||| ||||    
T  6502603 atggttgatttactaatccctgacatcccccacatccctagcaggagaggagatcttgattgtttcaatagttgaatcacatcttgcgcatgagaatgta 6502702  T
Q  118 tgctctct 125  Q
    ||||||||    
T  6502703 tgctctct 6502710  T

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Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 6593465 - 6593550
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||||    
T  6593465 atggttgatttaccaatccctgtcatcccccatatccctattatgagaggactttttgattgtttcaatagttgaatcacgtcttg 6593550  T

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Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 6832125 - 6832044
Alignment:
Q  22 ttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  6832125 ttgatttaccaatccctggcatcccccatatccctagtatgagaggagattttgactgtttcaatagttgaatcacatcttg 6832044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 6748632 - 6748533
Alignment:
Q  23 tgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgtatgctc 122  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||  |||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  6748632 tgatttaccaacccctgccatcccccatatcccgagtaggagaggggatttcgattgttttaatagttgaatcacatcttgggcacgagaatttatgctc 6748533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 6627114 - 6627199
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||    
T  6627114 atggttgatttaccaatccctcccatcccccatatccctattagaagaggagagtttgattgtttcaatagttgaatcacatcttg 6627199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 6550727 - 6550831
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttgggcacgagagtgta 117  Q
    ||||||| |||||||||||||| ||||||||| |||||||  || |||||| ||||||||||||||||||||||||||||||||||  ||||||| | ||    
T  6550727 atggttgttttaccaatccctgccatcccccaaatccctataagtagaggagattttgattgtttcaatagttgaatcacatcttgcacacgagaattta 6550826  T
Q  118 tgctc 122  Q
    |||||    
T  6550827 tgctc 6550831  T

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Target: chr4; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 6522912 - 6522994
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatc 100  Q
    |||||||||||||||||||||  |||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||    
T  6522912 atggttgatttaccaatccctaccatcccccatatgcctattacgagaggagattttgattgtttcaatagttgaatcacatc 6522994  T

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Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6646832 - 6646747
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| || ||||||||||||||    
T  6646832 atggttgatttaccgatccctgccatcccccatatccctattaggagaggacttcttgattgtttcaacaggtgaatcacatcttg 6646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 377
Target Start/End: Complemental strand, 6748414 - 6748264
Alignment:
Q  229 attatatgtataacaattctccaacatgtacataagttaaaataa--tatatttgctaaactcataatagtcaaacgaatcaaaacatttagtattaaaa 326  Q
    ||||||||||||||||||||||||||| |   || || |||||||  || ||||||||||| ||| ||| |||||  ||||||||||| |  ||||||||    
T  6748414 attatatgtataacaattctccaacatttgtgtacgtgaaaataatgtaaatttgctaaacgcattatattcaaataaatcaaaacatgtgttattaaaa 6748315  T
Q  327 atgccataaagatttagtaatctaatttcaaatcaagcaagtttcattact 377  Q
    || |||||||||   ||||||| |||||||||| |||||||||||||||||    
T  6748314 attccataaagacagagtaatccaatttcaaataaagcaagtttcattact 6748264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 6769306 - 6769229
Alignment:
Q  26 tttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||||||||| ||||| | ||||| |||| |||||||||||||||||| |||||||||||||||    
T  6769306 tttaccaatccctgtcatcccccaaatcccaattaggaaaggagattttgattgtttcaataattgaatcacatcttg 6769229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 6476 - 6561
Alignment:
Q  18 atggttgatttaccaatccctgtcatcccccatatccctagtaggagaggacattttgattgtttcaatagttgaatcacatcttg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  6476 atggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgatcgtttcaatagttgaatcacatcttg 6561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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