View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_5 (Length: 434)
Name: NF11669_low_5
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 25 - 424
Target Start/End: Complemental strand, 42394278 - 42393879
Alignment:
| Q |
25 |
ttggggagcaagtgtttttgacggtgttaaacgtgtttactaatatgatgtggggtgcggcgatggaggacggagagagggagtgcttaggagcggagtt |
124 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |
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| T |
42394278 |
ttggggagcaagtgtttttgacggtgttgaacgtgattactaatatgatgtggggtgcggcgatggaggacggtgagagggagagcttaggagcggaatt |
42394179 |
T |
|
| Q |
125 |
taggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaa |
224 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |
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| T |
42394178 |
taggaagacagcagcagagatggtgcagctcatagggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaa |
42394079 |
T |
|
| Q |
225 |
gatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaagg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394078 |
gatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaagg |
42393979 |
T |
|
| Q |
325 |
attttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393978 |
attttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
42393879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 25 - 424
Target Start/End: Complemental strand, 42378363 - 42377961
Alignment:
| Q |
25 |
ttggggagcaagtgtttttgacggtgttaaacgtgtttactaatatgatgtggggtgcggcgatggaggacggagagagggagtgcttaggagcggagtt |
124 |
Q |
| |
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|||| ||||| || ||||| |||||||| || ||| |||| ||||||||||||||||||| | |||| | | |||||||||| | ||||| |||||||| |
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| T |
42378363 |
ttggtgagcaggtttttttaacggtgttgaatgtgattacgaatatgatgtggggtgcgggggtggaaggagaagagagggagagtttaggggcggagtt |
42378264 |
T |
|
| Q |
125 |
taggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaa |
224 |
Q |
| |
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|||| || | | ||||||||||||||||| | ||||||||||| |||||||| |||| |||||| |||||||||||||||||| |||||||| |
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| T |
42378263 |
tagggaggcggtggcggagatggtgcagctattggggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaa |
42378164 |
T |
|
| Q |
225 |
gatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagta |
321 |
Q |
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||||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||| || |||||| | || || |||||| | || |||| |
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| T |
42378163 |
gatatgaatgctttggtgcctcgctttgatgggatatttgagaagatgattggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagta |
42378064 |
T |
|
| Q |
322 |
aggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacct |
421 |
Q |
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||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| || |||| || || || |||||||| ||| ||||||||||| | |
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| T |
42378063 |
gggactttctgcagtttttgttgaatttgaaggaggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctactt |
42377964 |
T |
|
| Q |
422 |
ttg |
424 |
Q |
| |
|
||| |
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|
| T |
42377963 |
ttg |
42377961 |
T |
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