View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_6 (Length: 427)
Name: NF11669_low_6
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 1824301 - 1823910
Alignment:
| Q |
19 |
cacagatgacaaaaaatccaacagataacataaaggaaatgtaagagagagtgtttgatatatcattgtttcattgaaacttatggatttttcatcctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1824301 |
cacagatgacaaaaaatccaacagataacataaaggaaatgtaagagagagtgtttgatatatcattgtttcattgaaacttatggatttttcatcctaa |
1824202 |
T |
|
| Q |
119 |
tgcaaaaactatgctatatatttgctaatcaaaccgaaaaaacttaatgtgaatgattgctttcacactatatcatattcattgaaacttatggatttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1824201 |
tgcaaaaactatgctatatatttgctaatcaaaccgaaaaaagttaatgtgaatgattgctttcacactatatcatattcattgaaacttatggatttct |
1824102 |
T |
|
| Q |
219 |
tgtttcagatatctactgttttgctgctgcatattgttaaattaacatttcttcaatgttaatatagacattatatttggatgatttaaccaattcaacg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1824101 |
tgtttcagatatctactgttttgctgctgcatattgttaaattaaaatttcttcaatgttaatatagacattatatttggatgatttaaccaattcaacg |
1824002 |
T |
|
| Q |
319 |
agaagaaaatacacaattaattaatataacatttttccaagttacaatgatagtccaaatagatcacggttgaagatggatgataaagtttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1824001 |
agaagaaaatacacaattaattaatataacatttttccaagttacaatgatagtccaaatagatcacggttgatgatggatgataaagtttt |
1823910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University