View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11669_low_8 (Length: 396)
Name: NF11669_low_8
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 32953076 - 32953450
Alignment:
| Q |
19 |
tttcttagaaaaataacattattttttagcatgattgtaattctgaaattttcctctcgtaaattttcagcattataggtgcatttatcgtcatcatggg |
118 |
Q |
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| T |
32953076 |
tttcttagaaaaataacattattttttagcatgattgtaattctgaaattttcctctcgtaaattttcagcattataggtgcatttatcgtcatcatggg |
32953175 |
T |
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| Q |
119 |
tttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaagatatatcgcagtgcaatagtgaccatccataacggaggc-- |
216 |
Q |
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| T |
32953176 |
tttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaagatatatcgcagtgcaatagtgaccatccataacgcaggcgg |
32953275 |
T |
|
| Q |
217 |
-----atgttattggccgttttaacagtgggaagaaaaataacaggaacatccttacggccatggcacgatgttttggtcgcgactgaccaaccattaca |
311 |
Q |
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| T |
32953276 |
cgattatgttattggccgttttaacagtgggaagaaaaataacaggaacatccttacggccacggcacgatgttttggtcgcgactgaccaaccattaca |
32953375 |
T |
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| Q |
312 |
gctgcnnnnnnngaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctttg |
386 |
Q |
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| T |
32953376 |
gctgcaaaaaaagaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctttg |
32953450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 32919447 - 32919604
Alignment:
| Q |
19 |
tttcttagaaaaataacattattttttagcatgattgtaattctgaaattttcctctcgt-aaattttcagcattataggtgcatttatcgtcatcatgg |
117 |
Q |
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| T |
32919447 |
tttcttagaaaaataacattattttttagcataataatatttctgaaattttcttttcattaaattttcagcatcataggtggttttattgtcatcgtgg |
32919546 |
T |
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| Q |
118 |
gtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaa |
175 |
Q |
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| T |
32919547 |
gtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
32919604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 32885318 - 32885454
Alignment:
| Q |
41 |
tttttagcatgattgtaattctgaaattttcctctcgtaaattttcagcattataggtgcatttatcgtcatcatgggtttgtatttgttgctgtggggg |
140 |
Q |
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| T |
32885318 |
tttttagcataattgtagttctaaaagttggttctcgtaattctttagcatcataggtgcatttattgtgatcatgggtttgtatctgttgctgtggggg |
32885417 |
T |
|
| Q |
141 |
aaagaaggtgacaaagtggttgatttcaagaccaaag |
177 |
Q |
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| T |
32885418 |
aaagaaggtgacaaagaggttgatttcaagaccaaag |
32885454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 32935744 - 32935838
Alignment:
| Q |
81 |
attttcagcattataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaa |
175 |
Q |
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||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
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| T |
32935744 |
attttcagcctcataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 19503632 - 19503512
Alignment:
| Q |
79 |
aaattttcagcattataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaaga |
178 |
Q |
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||||||||||||| || |||||| |||| ||||||||||| | || ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
19503632 |
aaattttcagcatgatcggtgcacttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaagg |
19503533 |
T |
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| Q |
179 |
tatatcgcagtgcaatagtga |
199 |
Q |
| |
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|| || ||||||| ||||||| |
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| T |
19503532 |
taaattgcagtgctatagtga |
19503512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 32896076 - 32896195
Alignment:
| Q |
79 |
aaattttcagcattataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaaga |
178 |
Q |
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|||| |||||||| ||||||| ||||| |||||||||||| | ||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
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| T |
32896076 |
aaatcttcagcatcataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaagt |
32896175 |
T |
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| Q |
179 |
tatatcgcagtgcaatagtg |
198 |
Q |
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|| | ||||| |||||||| |
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| T |
32896176 |
taaaaggcagtacaatagtg |
32896195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 7805902 - 7805849
Alignment:
| Q |
331 |
aatttccagatcctagtcatcacctcctttttatttacagctccgttactcctt |
384 |
Q |
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|||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
7805902 |
aatttccagatctttgtcatcacctcctctttatttacagctttgttactcctt |
7805849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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