View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11669_low_9 (Length: 375)
Name: NF11669_low_9
Description: NF11669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11669_low_9 |
 | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 38935464 - 38935815
Alignment:
| Q |
19 |
caactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935464 |
caactgaggtccaagtcgaattgttagagtttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaa |
38935563 |
T |
|
| Q |
119 |
tgttatatctctgtgcacaattggtggagagcaatcactatgcaggtaagcgattgcatgagctattccttgcacaattttcacccttgcactccaactt |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38935564 |
tgttatatctctgtgcacaattgctggagagcaatcactatgcaggtaagcgattgcatgagctattccttgcacaatttccacccttgcactccaactt |
38935663 |
T |
|
| Q |
219 |
agctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttcataaaccaggaacatttgtctcctcatagaacagaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935664 |
agctccaattttccttctcctccatacaacacttttcccaagcttcctttctctacatgttcataaaccaggaacatttgtctcctcatagaacagaaac |
38935763 |
T |
|
| Q |
319 |
cataaagctttattatattccggtgcctcacttctgttagcgttcttctctc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38935764 |
cataaagctttattatattccggtgcctcacttctgttagcgttcttatctc |
38935815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 10144 - 10264
Alignment:
| Q |
18 |
acaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattca |
117 |
Q |
| |
|
||||||||| ||| ||| | ||||||| ||||||||| ||| |||| ||||||||||||||| |||||||||||| |||||||||||||| | |||| |
|
|
| T |
10144 |
acaactgagctcctagttgtattgttaaagcttagcaacttgatagtg--aaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttca |
10241 |
T |
|
| Q |
118 |
atgttatatctctgtgcacaatt |
140 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10242 |
atgttatatctctgtgcacaatt |
10264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 19702441 - 19702513
Alignment:
| Q |
68 |
aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
140 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
19702441 |
aaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatt |
19702513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 22902463 - 22902535
Alignment:
| Q |
68 |
aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
140 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
22902463 |
aaaatctgtaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
22902535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 26662207 - 26662279
Alignment:
| Q |
68 |
aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
140 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| | |||||||||| |||| |||||| |||| |
|
|
| T |
26662207 |
aaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatt |
26662279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University