View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_high_1 (Length: 916)
Name: NF1166_high_1
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 35 - 909
Target Start/End: Complemental strand, 44145590 - 44144712
Alignment:
| Q |
35 |
atgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctt |
134 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| ||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
44145590 |
atgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctt |
44145491 |
T |
|
| Q |
135 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44145490 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgactgaattaatctag |
44145391 |
T |
|
| Q |
235 |
caagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactcttcctgtacagaggctgaaaattaatgttggtgtcggttgtttt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44145390 |
caagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgtttt |
44145291 |
T |
|
| Q |
335 |
gaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggccttcgcagccacaaggagggaagagattacactatctcctctgatgg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44145290 |
gaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggccttcgcagctacaaggaaggaagatattacactatctcctctgatgg |
44145191 |
T |
|
| Q |
435 |
ctgaatctctggccttgatatggtgtttgcaacgggttcagatgcaagatttccacaatttgatcattgactcggacgcagaaactttaacacacggctt |
534 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44145190 |
ttgaatccctagccttgatatggtgtttgcaacgggtttagatgcaagatttccacaatttgatcattgactcagacgcagaaactttaacacacggctt |
44145091 |
T |
|
| Q |
535 |
gggtagccaggtgaaagcatgctgacattgactatataattctggactgtaaagaaatactgcagcacatgaattctaggactttggttttaaaatggtc |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44145090 |
gggtagccaggtgaaagcatgctgacattgaccatataattctggactgtaaagaaatactgcagcacatgaattctaggactttggttgtaaaatggtc |
44144991 |
T |
|
| Q |
635 |
cagaccctgccatgaattgtatttgttatgacttattatgtctctaatgaaaatcttgtttacatgttaaaaagattaaaataatcctcctattcgaaac |
734 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
44144990 |
cagaccttgccatgaattgcatttgttatgacttattatttctctaatgaaaatcttattttcatgtcaaaaaaattaaaataatcctcctattcgaaac |
44144891 |
T |
|
| Q |
735 |
ttgcaagtgagtctaaatttgattgcaatttttgacaataaaacacctgatattatatttgtttatttacga----nnnnnnnnnnattgaaacatgtct |
830 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44144890 |
ttgcaagtgagtctaaatttgattgcattttttgacaataaaacacctgatattatatttgtttatttacgattttttttttttttattgaaacatgtct |
44144791 |
T |
|
| Q |
831 |
aagatagtatgctttctaagaataccatgtcagcattgttttttaattttactaatcaacaataggttcagtattatct |
909 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44144790 |
aagatagtatgctttctaagaataccatgtcagcattgttttttaattttactaatcaacaatagattcagtattatct |
44144712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 44156382 - 44156610
Alignment:
| Q |
35 |
atgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctt |
134 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||| ||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
44156382 |
atgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctt |
44156481 |
T |
|
| Q |
135 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||| |
|
|
| T |
44156482 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacataaatatattccc-------gaccaaattaatctag |
44156574 |
T |
|
| Q |
235 |
caagaaagggtgtaaaactggaaacactctgtccaa |
270 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
44156575 |
aaagaaaggttgtaaaattggaaacactttgtccaa |
44156610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 595
Target Start/End: Original strand, 44158235 - 44158411
Alignment:
| Q |
420 |
tatctcctctgatggctgaatctctggccttgatatggtgtttgcaacgggttcagatgcaagatttccacaatttgatcattgactcggacgcagaaac |
519 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||| | |||||||||||| |||||| ||| | || ||||||||||||||||| |||| | |||| |
|
|
| T |
44158235 |
tatctcctttgatggctgaagcactggccttgacacggtgtttgcaacatgttcagcaacaaaaatttcacaatttgatcattgagacggatgttgaaat |
44158334 |
T |
|
| Q |
520 |
tttaacacacggcttgggtagccaggtgaaagcatgctgacattgactatata--attctggactgtaaagaaatact |
595 |
Q |
| |
|
| ||| |||| |||| ||| | || ||| ||||||||||||||||| || || |||||||||| ||| |||||||| |
|
|
| T |
44158335 |
tgtaaaacactgctttggtggacaagtg-aagcatgctgacattgatcatttaatattctggactttaaggaaatact |
44158411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 44158103 - 44158164
Alignment:
| Q |
293 |
cctgtacagaggctgaaaattaatgttggtgtcggttgttttgaatgttgtactggttatgg |
354 |
Q |
| |
|
|||||||| |||||||||| ||||| || || | ||||||||||| ||||||||||||||| |
|
|
| T |
44158103 |
cctgtacataggctgaaaactaatgctgatgctgattgttttgaatattgtactggttatgg |
44158164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University