View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_10 (Length: 555)

Name: NF1166_high_10
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_10
NF1166_high_10
[»] chr6 (3 HSPs)
chr6 (30-548)||(34697552-34698070)
chr6 (63-230)||(34720384-34720545)
chr6 (123-198)||(34693967-34694042)
[»] chr2 (11 HSPs)
chr2 (30-548)||(26995212-26995732)
chr2 (63-234)||(27013255-27013426)
chr2 (62-189)||(27064684-27064811)
chr2 (147-258)||(27032026-27032136)
chr2 (302-478)||(38997574-38997766)
chr2 (123-198)||(26991709-26991784)
chr2 (300-397)||(25550437-25550535)
chr2 (416-477)||(25550346-25550407)
chr2 (507-548)||(27032212-27032253)
chr2 (419-476)||(25620747-25620802)
chr2 (507-548)||(27072578-27072619)
[»] chr8 (2 HSPs)
chr8 (68-172)||(18543048-18543152)
chr8 (302-380)||(1278865-1278944)


Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 30 - 548
Target Start/End: Original strand, 34697552 - 34698070
Alignment:
Q  30 attacttgatacacacatttttatggttctattgtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttccca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34697552 attacttgatacacacatttttatggttctattgtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttccca 34697651  T
Q  130 aggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgtt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34697652 aggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgtt 34697751  T
Q  230 ttgaaattattgtaaaatcagaacaatagnnnnnnnnnnttgcgtcttattaggccctaaataaataatgaaggaaaatgatatatgtagcgaaaatttc 329  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34697752 ttgaaattattgtaaaatcagaacaatagaaaaaaaaaattgcgtcttattaggccctaaataaataatgaaggaaaatgatatatgtagcgaaaatttc 34697851  T
Q  330 acgcgaaatcatccccagcccatgcattccaactttcaagtgttttaattgcctaaccattgaccccatccacgcgaaaacgttaagtggttaaacttat 429  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34697852 atgcgaaatcatccccagcccatgcattccaactttcaagtgttttaattgcctaaccattgaccccatccacgcgaaaacgttaagtggttaaacttat 34697951  T
Q  430 ttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctcaataaaaaatcgcatgtgcatagaaaaacgtataccttgcatcagcaattgc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34697952 ttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctcaataaaaaatcgcatgtgcatagaaaaacgtataccttgcatcagcaattgc 34698051  T
Q  530 tttgattgtcttcttttct 548  Q
    |||||||||||||||||||    
T  34698052 tttgattgtcttcttttct 34698070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 34720545 - 34720384
Alignment:
Q  63 gtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccaaccagaactatagc 162  Q
    ||||||||||||||||||||||||||||||| |      ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  34720545 gtaatacctgaaaattgtcaaaatcgcgtgtgg------tgtcatcaaacttttccatgtctgcccaaggtccatcaccaactccgaccaaaactatagc 34720452  T
Q  163 aagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgttt 230  Q
    |||||||||||||||||||| || |||| |||||||||||||  ||||| | ||||||||||||||||    
T  34720451 aagtggatatttactgtatcgtagataaagaatgaacattaacatatatgatgcacatgaaactgttt 34720384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 34693967 - 34694042
Alignment:
Q  123 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 198  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  34693967 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 34694042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 30 - 548
Target Start/End: Original strand, 26995212 - 26995732
Alignment:
Q  30 attacttgatacacacatttttatggttctattgtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttccca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26995212 attacttgatacacacatttttatggttctattgtaatacctgaaaattgtcaaaatcgcgtgacggaattttgtcatcaaacttttccatgtcttccca 26995311  T
Q  130 aggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgtt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26995312 aggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaacattaatatatattaagcacatgaaactgtt 26995411  T
Q  230 ttgaaattattgtaaaatcagaacaatagnnnnnnnnnnttgcgtcttattaggccctaaataaataatgaaggaaaatgatatatgtagcgaaaatttc 329  Q
    |||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26995412 ttgaaattattgtaaaatcagaacaatagaaaaaaaaaaatgcgtcttattaggccctaaataaataatgaaggaaaatgatatatgtagcgaaaatttc 26995511  T
Q  330 acgcgaaatcatccccagcccatgcatt-ccaactttcaagtgttttaattgcctaaccattgaccccatccacgcgaaaacgttaagtggttaaa-ctt 427  Q
    ||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  26995512 acgtgaaatcatccccagcccatgtatttccaactttcaagtgttttaattggctaaccattgaccccatccacgcgaaaacgttaagtggttaaaactt 26995611  T
Q  428 atttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctcaataaaaaatcgcatgtgcatagaaaaacgtataccttgcatcagcaatt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||    
T  26995612 atttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctcaataaaaaaacgtatgtgcataaaaaaatgtataccttgcatcagcaatt 26995711  T
Q  528 gctttgattgtcttcttttct 548  Q
    |||||||||||||||||||||    
T  26995712 gctttgattgtcttcttttct 26995732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 27013426 - 27013255
Alignment:
Q  63 gtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccaaccagaactatagc 162  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  27013426 gtaatacctgaaaattgtcaaaatcgcgtgtcggaagtttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccgatcagaactatagc 27013327  T
Q  163 aagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgttttgaa 234  Q
    ||||||||||||||||||||||| |||| |||||||||||||  ||||| | ||||||||||||||||||||    
T  27013326 aagtggatatttactgtatcatagataaagaatgaacattaacatatatgatgcacatgaaactgttttgaa 27013255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 27064811 - 27064684
Alignment:
Q  62 tgtaatacctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccaaccagaactatag 161  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27064811 tgtaatacctgaaaattgtcaaaatcgcgtgtctgaattttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccgaccagaactatag 27064712  T
Q  162 caagtggatatttactgtatcataaata 189  Q
    ||||||||||||||||||||| ||||||    
T  27064711 caagtggatatttactgtatcgtaaata 27064684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 27032026 - 27032136
Alignment:
Q  147 caaccagaactatagcaagtggatatttactgtatcataaataaggaatgaacattaatgtatattaagcacatgaaactgttttgaaattattgtaaaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||| || |||| |||||    
T  27032026 caaccagaactatagcaagtggatatttactgtatcataaataaagagtgaacattaatgaatattaaacacatgaaactgttttg-aagtattttaaaa 27032124  T
Q  247 tcagaacaatag 258  Q
     |||||||||||    
T  27032125 acagaacaatag 27032136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 302 - 478
Target Start/End: Original strand, 38997574 - 38997766
Alignment:
Q  302 ggaaaatgatatatgtagcgaaaat-ttcacgcgaaatcatccccagcccatgcattccaactttcaagtgttttaattgcctaaccattgaccccatcc 400  Q
    ||||||||||||||   |||||||  ||||| |||||||||||| ||||||||||||||  |||| |||||||||||||| ||||||||| |||||| ||    
T  38997574 ggaaaatgatatattgggcgaaaaaattcacacgaaatcatcccaagcccatgcattccggctttgaagtgttttaattggctaaccatttaccccaccc 38997673  T
Q  401 ac---------------gcgaaaacgttaagtggttaaacttatttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctca 478  Q
    |                || ||||  |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  38997674 agtgtttattctggccagcaaaaattttaagtggttgaacttatttcgctatgcaatcgtgagacaattgctcgcgatgcatagcactcctca 38997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 26991709 - 26991784
Alignment:
Q  123 cttcccaaggtccatcaccaactccaaccagaactatagcaagtggatatttactgtatcataaataaggaatgaa 198  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  26991709 cttcccaaagttcatcaccaactccaactagaactatagcaagtggatatttactgtatcgtaaataaagaatgaa 26991784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 25550535 - 25550437
Alignment:
Q  300 aaggaaaatgatatatgtagcgaaaa-tttcacgcgaaatcatccccagcccatgcattccaactttcaagtgttttaattgcctaaccattgacccca 397  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||| | || || ||||||  ||||||||||||||||||| ||||||||| ||||||    
T  25550535 aaggaaaatgatgtatgcagcgaaaaatttcacgcgaaatcatcccgatcctatacattccggctttcaagtgttttaattggctaaccatttacccca 25550437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 25550407 - 25550346
Alignment:
Q  416 gtggttaaacttatttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcctc 477  Q
    |||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||    
T  25550407 gtggttaaacttatttcgctatgcaaccgtgagataattgctcgcgatgcatagcactcctc 25550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 27032212 - 27032253
Alignment:
Q  507 gtataccttgcatcagcaattgctttgattgtcttcttttct 548  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  27032212 gtataccttgcatcagcaattgctttgattgttttcctttct 27032253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 476
Target Start/End: Complemental strand, 25620802 - 25620747
Alignment:
Q  419 gttaaacttatttcgctatgcaatcatgatacaattgctcgcgatgcatagcactcct 476  Q
    ||||||||||||||||| ||||||| ||| ||||  |||| |||||||||||||||||    
T  25620802 gttaaacttatttcgctgtgcaatcgtgagacaa--gctcacgatgcatagcactcct 25620747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 27072619 - 27072578
Alignment:
Q  507 gtataccttgcatcagcaattgctttgattgtcttcttttct 548  Q
    |||| |||||||| ||||||| ||||||||||||||||||||    
T  27072619 gtatgccttgcattagcaattcctttgattgtcttcttttct 27072578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 18543152 - 18543048
Alignment:
Q  68 acctgaaaattgtcaaaatcgcgtgtcggaattttgtcatcaaacttttccatgtcttcccaaggtccatcaccaactccaaccagaactatagcaagtg 167  Q
    |||||||||||||| ||||||||||  || |  |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||| |    
T  18543152 acctgaaaattgtcgaaatcgcgtgcaggtaacttgtcatcaaactttttcatatcttcccaaggtccatcaccaactccaaccagaacaatagaaagag 18543053  T
Q  168 gatat 172  Q
    |||||    
T  18543052 gatat 18543048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 1278944 - 1278865
Alignment:
Q  302 ggaaaatgatatatgtagcgaaaa-tttcacgcgaaatcatccccagcccatgcattccaactttcaagtgttttaattg 380  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||| ||||| | ||||||  ||||| |||||||||||||    
T  1278944 ggaaaatgatatattcagcgaaaaatttcatgcgaaatcatcccgagcccgttcattccggctttctagtgttttaattg 1278865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University