View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_16 (Length: 464)

Name: NF1166_high_16
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_16
NF1166_high_16
[»] chr4 (3 HSPs)
chr4 (30-464)||(50652942-50653381)
chr4 (263-406)||(50640965-50641108)
chr4 (290-406)||(50635900-50636016)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 30 - 464
Target Start/End: Original strand, 50652942 - 50653381
Alignment:
Q  30 ctctttccattggagaagctctaaatgcattaaattagaagacatttacataattattactacaata-----ttccatagacaacatataattattaact 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  50652942 ctctttccattggagaagctctaaatgcattagattagaagacatttacataattattactacaatataatattccatagacaacatataattattaact 50653041  T
Q  125 aatagaagcataaataggtttaaggatttaagcaaccaaatatctagagtaattgtctaacaatagatgatgtaacagctgaaacatcatgcatagcatt 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653042 aatagaagcataaataggtttaaggatttaagcaaacaaatatctagagtaattgtctaacaatagatgatgtaacagctgaaacatcatgcatagcatt 50653141  T
Q  225 attctgttttgtgagtggagatttcccattgaactcactctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653142 attctgttttgtgagtggagatttcccattgaactcactctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcc 50653241  T
Q  325 cctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcaccacaagaactcaaagctttcctagctccatttccca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653242 cctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcaccacaagaactcaaagctttcctagctccatttccca 50653341  T
Q  425 acctttgtagctgttggatcttatttaatccatcgtttgc 464  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  50653342 acctttgtagctggtggatcttatttaatccatcgtttgc 50653381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 406
Target Start/End: Original strand, 50640965 - 50641108
Alignment:
Q  263 tctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagc 362  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||  ||||||||||||| || ||||||| |||| | ||  || | | || |    
T  50640965 tctcacaagtagtggcgtcatttgcagcatcatttgcaccatcttctgcaactttaggatccccttgcttcaaagctgcaatggattttggcacaacatc 50641064  T
Q  363 tatcaaaattgctctatatttgtcaccacaagaactcaaagctt 406  Q
    || |||||||| ||||||| |  || |||| |||||||||||||    
T  50641065 taccaaaattgatctatatctaccagcacatgaactcaaagctt 50641108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 50635900 - 50636016
Alignment:
Q  290 catcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcacc 389  Q
    ||||||||||||||||||||||||| || ||||| |||| || ||||||| ||| || ||  || | |||||||| |||||||||||| ||| |  || |    
T  50635900 catcatttgcaccatcttctgcaaattttggatctccttgcttcaaagctgcaacagattttggcacatcagctaccaaaattgctctgtatctaccagc 50635999  T
Q  390 acaagaactcaaagctt 406  Q
    ||| ||| |||||||||    
T  50636000 acatgaattcaaagctt 50636016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University