View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_18 (Length: 443)

Name: NF1166_high_18
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_18
NF1166_high_18
[»] chr3 (2 HSPs)
chr3 (30-435)||(45729121-45729526)
chr3 (30-376)||(45724991-45725337)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 435
Target Start/End: Complemental strand, 45729526 - 45729121
Alignment:
Q  30 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45729526 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 45729427  T
Q  130 catggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45729426 catggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagattgcgagg 45729327  T
Q  230 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45729326 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 45729227  T
Q  330 tgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcannnnnnnctctgcaacttgttttttaccatcttccatgtgtgtgtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  45729226 tgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcatttttttctctgcaacttgttttttaccatcttccatgtgtgtgtt 45729127  T
Q  430 catctc 435  Q
    | ||||    
T  45729126 cttctc 45729121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 45725337 - 45724991
Alignment:
Q  30 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 129  Q
    |||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||  ||||| ||||| ||||||||||| |||||    
T  45725337 aagtggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccggtgaggattccgacaaaggcggctgcaaagaaaataggtggttt 45725238  T
Q  130 catggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagg 229  Q
    |||||||||||||||| ||||||||| |||||||||||||||  | ||||||  ||| | | || || |||||   |||| |||||||||||||| ||||    
T  45725237 catggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattgtgagg 45725138  T
Q  230 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 329  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  45725137 ggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattaggggaccac 45725038  T
Q  330 tgcaggtacctagggataatatgagacaatttactacgagaaggaat 376  Q
     | || ||||||||| |||||| |||||||||||||  |||||||||    
T  45725037 cggagttacctagggctaatatcagacaatttactatcagaaggaat 45724991  T

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