View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_2 (Length: 834)

Name: NF1166_high_2
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_2
NF1166_high_2
[»] chr4 (13 HSPs)
chr4 (4-737)||(33750077-33750816)
chr4 (188-396)||(33718945-33719153)
chr4 (190-396)||(33735618-33735824)
chr4 (189-384)||(33720976-33721171)
chr4 (16-137)||(33735871-33735992)
chr4 (17-135)||(33719203-33719321)
chr4 (552-641)||(33720746-33720835)
chr4 (552-663)||(33718672-33718783)
chr4 (16-122)||(33721214-33721326)
chr4 (552-637)||(33735359-33735444)
chr4 (424-491)||(33718850-33718917)
chr4 (415-481)||(33720864-33720930)
chr4 (415-468)||(33735540-33735593)
[»] chr7 (2 HSPs)
chr7 (326-378)||(6583050-6583102)
chr7 (326-378)||(6568891-6568943)
[»] chr6 (2 HSPs)
chr6 (335-381)||(13409875-13409921)
chr6 (7-96)||(32575066-32575155)
[»] chr1 (1 HSPs)
chr1 (332-390)||(44331866-44331925)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 4 - 737
Target Start/End: Complemental strand, 33750816 - 33750077
Alignment:
Q  4 atctccaacaatatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatattt 103  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33750816 atctccaccaaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatattt 33750717  T
Q  104 gtctcactttgaatttcttgattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtg 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750716 gtctcactttgcatttcttgattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtg 33750617  T
Q  198 aatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750616 aatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgt 33750517  T
Q  298 tccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750516 tccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctc 33750417  T
Q  398 nnnnnnnnnnnnnnnnnctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaacaattc 497  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33750416 ttttgtttttgttttttctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttctatgttcgcaggtggaacaattc 33750317  T
Q  498 tttctaannnnnnnnnnnnnnnnnntccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgat 597  Q
    |||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750316 tttctaagctgctgctgctgctgcttccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgat 33750217  T
Q  598 gacagagagttcttgatcggaagtgagtgtggtgggggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttgga 697  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750216 gacagagagttcttgatcggaggtgagtgtagtggcggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttgtttgtgttgga 33750117  T
Q  698 gtttggaatgtttaaggtttagaagatttgatgtttttgg 737  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33750116 gtttggaatgtttaaggtttagaagatttgatgtttttgg 33750077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 188 - 396
Target Start/End: Complemental strand, 33719153 - 33718945
Alignment:
Q  188 tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg 287  Q
    |||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  33719153 tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg 33719054  T
Q  288 tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttctt 387  Q
    ||| ||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  33719053 tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctctatacttctt 33718954  T
Q  388 cttagctct 396  Q
     ||||||||    
T  33718953 tttagctct 33718945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 190 - 396
Target Start/End: Complemental strand, 33735824 - 33735618
Alignment:
Q  190 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 289  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33735824 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 33735725  T
Q  290 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttct 389  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||    
T  33735724 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgtacttcttct 33735625  T
Q  390 tagctct 396  Q
    |||||||    
T  33735624 tagctct 33735618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 189 - 384
Target Start/End: Complemental strand, 33721171 - 33720976
Alignment:
Q  189 gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt 288  Q
    ||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  33721171 gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt 33721072  T
Q  289 ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtactt 384  Q
    || ||| ||||| |||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||    
T  33721071 ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgtactt 33720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 33735992 - 33735871
Alignment:
Q  16 atccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttga 115  Q
    ||||||||||||||| |||||||||||||||| ||| || |  ||||||||||||||||||| | ||||| || ||||||||||| |||||||| ||||     
T  33735992 atccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgt 33735893  T
Q  116 atttcttgattcatattctcgt 137  Q
    ||||||||||||||||||||||    
T  33735892 atttcttgattcatattctcgt 33735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 33719321 - 33719203
Alignment:
Q  17 tccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaa 116  Q
    ||||||||| |||| | |||||||||||||| ||| ||||  |||||| |||||||||||||| |||||||| |||| ||| |  |||| ||| |||| |    
T  33719321 tccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgca 33719222  T
Q  117 tttcttgattcatattctc 135  Q
    |||||||||||||||||||    
T  33719221 tttcttgattcatattctc 33719203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 552 - 641
Target Start/End: Complemental strand, 33720835 - 33720746
Alignment:
Q  552 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaagg 641  Q
    ||||||||||||| |||||||| || ||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||| | ||||||||    
T  33720835 cggtggaggtggaaccggagactacgttggttagggcagcgacgatgactgagagttcttgatcggaggtgagggtggtagtggagaagg 33720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 552 - 663
Target Start/End: Complemental strand, 33718783 - 33718672
Alignment:
Q  552 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaaggaagaagagga 651  Q
    |||| |||||||||||||||||||| ||||||| ||| | ||| ||||| ||  ||||||||||||| | ||| |||| || ||||||||| ||||||||    
T  33718783 cggttgaggtggagccggagacgactttggttagggcggtgacaatgacggattgttcttgatcggaggggagagtggaggaggagaaggaggaagagga 33718684  T
Q  652 gtagttcatgtt 663  Q
    || |||||||||    
T  33718683 gttgttcatgtt 33718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 33721326 - 33721214
Alignment:
Q  16 atccataaacctcatcagttgttgaaaatcag---tttccccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctca 109  Q
    ||||||||||||||| ||||||||||||||||    ||||||||  ||||||||||||||||| ||   | |||||||||||||||||||  ||||||||    
T  33721326 atccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctca 33721227  T
Q  110 ctttgaatttctt 122  Q
     |||| |||||||    
T  33721226 atttgcatttctt 33721214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 637
Target Start/End: Complemental strand, 33735444 - 33735359
Alignment:
Q  552 cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggag 637  Q
    |||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||| ||||| | || |||||||    
T  33735444 cggtggaggtggagccggagactacgttggttaaagcagcaacgatggcggagagttcttgatcggaggtgagagcggcgggggag 33735359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 33718917 - 33718850
Alignment:
Q  424 gaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaa 491  Q
    |||||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||  |||||||    
T  33718917 gaagaaattgcatcctaaacatcctgctatgttgcattcgcggcaggtttccatgttcgttggtggaa 33718850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 481
Target Start/End: Complemental strand, 33720930 - 33720864
Alignment:
Q  415 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttc 481  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| | |||||||| ||||||    
T  33720930 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccgacaggtttctatgttc 33720864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 33735593 - 33735540
Alignment:
Q  415 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggca 468  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  33735593 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggca 33735540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  326 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 378  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  326 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 378  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 13409921 - 13409875
Alignment:
Q  335 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 381  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  13409921 atttctgctgcccattttccccatggtctttgtctcactcctctgta 13409875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 32575155 - 32575066
Alignment:
Q  7 tccaacaatatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcc 96  Q
    |||| ||| ||||||||||||||| | |||  |||| |||  |||||||| | |||||||||| ||||||||||||| ||| | ||||||    
T  32575155 tccaccaaaatccataaacctcataacttgccgaaattcaccttccccaatcatatcccaaaattcacaatccatatcatttctaaatcc 32575066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 44331866 - 44331925
Alignment:
Q  332 cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgta-cttcttctt 390  Q
    |||||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||||    
T  44331866 cgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttcttctt 44331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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