View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_23 (Length: 412)
Name: NF1166_high_23
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 90 - 319
Target Start/End: Original strand, 31752099 - 31752328
Alignment:
| Q |
90 |
acagcaactcgaacagcaccttttgccgcccttggattccctgctcctaattcattcgaaactcgagtactgcnnnnnnnnnnnnntttataggatcgtg |
189 |
Q |
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| T |
31752099 |
acagcaactcgaacagcaccttttgccgcccttggattccctgctcctaattcattcgaaactcgagtactgcaaaaaaacaaaaatttataggatcgtg |
31752198 |
T |
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| Q |
190 |
tttttgacagcagatgattatgcagtatgtacaggaaaagagaaaaaacaggtttcgatcaaaccttgcagaagctccaattgcatgaggaatgaagtag |
289 |
Q |
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| T |
31752199 |
tttttgacagcagatgattatgcagtatgtacaggaaaagagaaaaaacaggtttcgatcaaaccttgcagaagctccaattgcatgaggaatgaagtag |
31752298 |
T |
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| Q |
290 |
tgcaatgtagttgtgctaaggctgcaaaag |
319 |
Q |
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| T |
31752299 |
tgcaatgtagttgtgctaaggctgcaaaag |
31752328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 31752351 - 31752416
Alignment:
| Q |
338 |
atgacaaattagaaaaaccct--tggctttgtttaaatagtatttgttaagaaattgatcattcat |
401 |
Q |
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| T |
31752351 |
atgacaaattagaaaacccttcatggctttgtttaaatagtatttgttaagaaattgatcattcat |
31752416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 184971 - 184930
Alignment:
| Q |
121 |
ttggattccctgctcctaattcattcgaaactcgagtactgc |
162 |
Q |
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| T |
184971 |
ttggatttcctgctcctaattcatttgaaacacgagtactgc |
184930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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