View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_high_27 (Length: 402)
Name: NF1166_high_27
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 46774245 - 46774591
Alignment:
| Q |
29 |
atgaatcaatatgcatttaatttgctttatttataactctggtggttttgtaagcttctactatatgtttcatgtttactaaaaattatcttaccaattg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46774245 |
atgaatcaatatgcatttaatttgctttatttataactctggtggttttgtaagcttctactatatgtttcatgtttactaaaaattatcttaccaattg |
46774344 |
T |
|
| Q |
129 |
agagtacaacatttcactgtttggtgcacgacacgcatttctctcctggtatgttatttttgtcgctgatcaattggccatatgtcaacatttcaannnn |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46774345 |
agagtacaacatttcactgtttggtgcatgacacgcatttctctcctagtatgttatttttgtcgctgattaattggccatatgtcaacatttcaatttt |
46774444 |
T |
|
| Q |
229 |
nnngttagtcattatcagccttcattgcaatagacttgcactgtttcatactatttttgcatgataatattccatcctatttttatattttgtctaaact |
328 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46774445 |
tttgttagtcattatcaaccttcattgcaaaagacttgcactgtttcatactatttttgcatgataatattccatcctgtttttatattttgtctaaact |
46774544 |
T |
|
| Q |
329 |
aagcatatttttattgttgtatatccaaatccaaaataaataaccca |
375 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46774545 |
aagcatgtttttattgttgtatatccaaatccaaaataaataaccca |
46774591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University